Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq61 134 2e-25 seq12 122 1e-21 seq44 96.9 5e-14 seq14 89.7 8e-12 >seq61 Length=1579179 Score = 134 bits (148), Expect = 2e-25 Identities = 232/331 (70%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| || |||||||||||||| ||||| Sbjct 1456599 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 1456658 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||| ||||||| | || || | | ||| ||||| |||||||| || || Sbjct 1456659 CTTGAGCCAGAAGATGG--AGGCAAAGGCACCACTGAAGAAGATACCCTCGACAGCAGCG 1456716 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | || || |||| |||||| || || | ||| | | |||||| || || Sbjct 1456717 AAGGCAACCAGACGCTGGGCAAAGGT----AGAGTCCTTGTCCTGGATCCATCGAATGGC 1456772 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575 ||| || ||||| || | | |||| | || || | ||| ||||||| ||| | Sbjct 1456773 CCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGGTTC- 1456831 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | | || || |||| ||||||||| ||||| || || |||||||| ||||| |||| Sbjct 1456832 GCTGGGCGGGCTCTTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCCGAGTGAATGT 1456891 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || ||| ||||| || || ||||| Sbjct 1456892 TCTCCATCATGATTTGGAATCCGTAGAAGCA 1456922 Score = 102 bits (112), Expect = 1e-15 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| |||||| |||||||||||||| | || ||||| |||||| | ||| Sbjct 1456303 ACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATGAAGTCGAAG 1456362 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAGGCGGTCGGCGA 794034 ||||||| | | |||| ||||||| |||| |||||| ||||| ||||| |||| Sbjct 1456363 GGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGTGCGACG--AGCAGACGGTCAGCGA 1456420 Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094 | || ||||||||||| |||||| || ||||||||| | || || ||| || | Sbjct 1456421 CAAACTCAATGTACTGCTTCATGAGATTGGAGTTCATGCCAAGCAGGGCACAGGGGAGGG 1456480 Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||| ||| ||||| | ||| || |||||| || Sbjct 1456481 CCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATC 1456517 >seq12 Length=4630793 Score = 122 bits (134), Expect = 1e-21 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 2035652 CAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTAT 2035711 ||||||||| ||||||||||||||||| ||| | || ||||| ||||| |||||| | || Sbjct 2953624 CAACTACCTTGACATCAAGCCCCTCCTTGATGTTGGCTGCAAAACCGTTGCCAACATGAT 2953565 Query 2035712 CAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 |||||||||||| || ||||| || |||||||| || ||||||| | ||| Sbjct 2953564 CAAGGGCAAGTCTCCTGAGGAAATTCGCAAGACGTTCAACATCACGAACG 2953515 Score = 96.9 bits (106), Expect = 5e-14 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 2411403 CTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTG 2411462 |||||| | ||||||||| ||| || |||||||||| | ||| | |||||| Sbjct 523171 CTCGCTTGAGCTCATCTTCTGCGCCTCCCCAAGACCCGGCACCATGGCGTTCATCAGGTG 523112 Query 2411463 GATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCG 2411522 ||||| |||||| ||| || || | || ||||||| ||||||||||| Sbjct 523111 TGCTCGCTTCTTGTAGCCAAGCTTGGGAAGATTCTCCAAGGCAAAGGTGAAGATCTTGCG 523052 Query 2411523 CTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCAT 2411582 ||||| || |||| || || || |||||||||| |||||| || || |||||||| Sbjct 523051 TTGGTCAATTCCACCAAGTTGTGCATCCACGTCGAGGTACTGCTCATCCAGAGCCTGCAT 522992 Query 2411583 GAGCGGGTAGA 2411593 || |||||||| Sbjct 522991 GATCGGGTAGA 522981 >seq44 Length=2799272 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || || ||||| || |||| ||| ||||| || ||||| || |||| |||||||| Sbjct 2095633 CTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGA 2095692 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| ||| | ||| || | ||| || | || Sbjct 2095693 TGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTGAGACC 2095752 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| |||||| || | || || | || || || || ||||| || || Sbjct 2095753 AATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTC 2095812 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || || || || | | || || Sbjct 2095813 AATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACC 2095872 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||||||||| ||||| Sbjct 2095873 AGCATTGAAGAGGGTGGG 2095890 >seq14 Length=676773 Score = 89.7 bits (98), Expect = 8e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| |||||||||||| |||| || || || | | Sbjct 671784 GTACTTGGTAACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCAGGGAG 671843 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | |||||||||||| |||| Sbjct 671844 GATGAGACGAACTGAGGTCTGGATCTCTCGGG 671875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916239698402657