Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq61 183 4e-40 >seq61 Length=1579179 Score = 183 bits (202), Expect = 4e-40 Identities = 355/511 (69%), Gaps = 20/511 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||| ||||||||| | || | Sbjct 1457136 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATC 1457078 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| || |||| | || |||| |||||| Sbjct 1457077 TCTCCAAGGACCTCCACGACTGGAACAACCGTCTGACCACTGATGAGCAGTTCTTCATCT 1457018 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| || ||| || ||||||||| || |||||| || | | Sbjct 1457017 CTCACATCCTTGCCTTCTT-CGCTGCGTCCGATGGCATTGTCAACGAGAATCTCGTTGAG 1456959 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | |||||||| | || ||||| || | || ||||| ||||| ||| Sbjct 1456958 CGATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTACGGATTCCAAATCATG 1456899 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| || ||||| || || || || ||||||||| |||| || || Sbjct 1456898 ATGGAGAACATTCACTCGGAGACCTATTCCCTGCTCATTGACACCTACATCAAAGAGCCC 1456839 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | | || | ||| ||||||| ||| | || || | || | | | || ||||| Sbjct 1456838 GCCCAGC-GAACCTACCTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGC 1456780 Query 1456131 CGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 |||||||| || |||||| | |||||| ||| || ||||||| |||| || Sbjct 1456779 TGACTGGGCCATTCGATGGATCCAGGACAAGGA----CTCTAC-CTTTGCCCAGCGTCTG 1456725 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCGCCATCTTTT 1456244 || | ||| || || |||||||| ||||| ||| | | || || | | ||||||| | Sbjct 1456724 GTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGC--CTCCATCTTCT 1456667 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| ||||||||||||||||| Sbjct 1456666 GGCTCAAGAAGCGTGGCCTCATGCCCGGTCT 1456636 Score = 100 bits (110), Expect = 4e-15 Identities = 171/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || |||||| || ||| | ||||| ||| ||| | || || || || | ||| Sbjct 1456517 GATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCCCTCCCCTGTGCCCTGCTTGGC 1456458 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 |||||| ||| |||||| ||||||||||| ||| ||||| ||||| ||||||| | Sbjct 1456457 ATGAACTCCAAT-CTCATGAAGCAGTACATTGAGTTT-GTCGCTGACCGTCTGCTCGTCG 1456400 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 | |||||| || ||||| |||| | | ||||||| ||| | |||||| ||| Sbjct 1456399 CACTCGGCAACG-AGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 1456341 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGTACGCCAAGGCCGGC 1456770 || || | |||||||||||||| |||||| || || || || ||| ||||| || Sbjct 1456340 TCTCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCTGACTACCAGAAGGCTGGT 1456281 Query 1456771 GTC 1456773 ||| Sbjct 1456280 GTC 1456278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177805123534206