Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq44 230 3e-55 >seq44 Length=2799272 Score = 230 bits (254), Expect = 3e-55 Identities = 929/1440 (65%), Gaps = 45/1440 (3%) Strand=Plus/Plus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 |||||||| |||||||| || ||| || | | |||| ||||| | ||||| || Sbjct 2094580 GTTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGG 2094639 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 || ||||| || || ||||||| || || | || ||| || ||||| || || | Sbjct 2094640 CTCGAAGCACTCGTTGTTACCCAGAATCTGCGAAGTACTGGCAGTAGGCATAGGGGCGAG 2094699 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC-CTTGAGAACA-TCCCAGTCG 110845 | ||||||||||| | ||| | ||| | | | | || || || |||||||| Sbjct 2094700 GAGCAGACTGTTACGGATACCGTGAGTCTTAA--CATCCTCTCGAAGACTCTCCCAGTCC 2094757 Query 110846 TAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | | || || || |||| ||||||| ||||| || | || | || ||||| Sbjct 2094758 CAAAGGTCGGAAGGCTTGACGTTCC-ACATGTCGAACTGGAGAATACCCTCAGAGGCGGG 2094816 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCA 110963 |||||||| ||||| |||| ||| | | | ||||| | ||| | || | Sbjct 2094817 AGAACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAG-GCAGTGA 2094875 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023 ||| ||||| || ||||| |||||||| | || | ||| | || || || | Sbjct 2094876 GGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCGGGAGACT 2094935 Query 111024 CAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 |||| | ||| || | || || |||| || ||||| || ||||| | ||| ||| Sbjct 2094936 CAAAGGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCGATA 2094994 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCA 111139 |||| ||| ||||| || || | ||| || ||| || || || ||| || Sbjct 2094995 GGTCGGTGACGCATGTTG--CTGTTGCG-AGCCTCTTGTACAGGGTAGTGATTGACATCG 2095051 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 |||| ||| | || | |||| || ||| | ||| || || | | ||| Sbjct 2095052 ATGATCTTGTTCAAGTTGCGGACGACAACCTGACTGACCTGATGCAGCTTCTTGAAGTCA 2095111 Query 111200 AAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAA 111256 | || || ||| || | ||| | || ||||| | || || | |||||| Sbjct 2095112 TA---GCAAGCCTCATCGTAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAA 2095168 Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316 ||||| |||||| | |||||| | || || || || | || || || Sbjct 2095169 ACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTAGAGCTTCGG 2095228 Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 || || || | ||||| ||||| ||||| ||| || ||||||||||| |||||| || Sbjct 2095229 ATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAG 2095288 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTAC 111435 || | || ||||| ||||| | | || || || | ||||| | || | | || | Sbjct 2095289 GGGTTTCCGGTCTCGGTCTGGGCCTCAAGGATGGCATACCAAAGCTTCTGAGCCTTG--- 2095345 Query 111436 AATGGCGTTGG--CCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 |||| ||| ||| | ||| | | ||||||||| ||||||||| |||||||| || Sbjct 2095346 -ATGGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTC 2095404 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| ||||| ||||| || || || || || | ||| | ||| | || Sbjct 2095405 ACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATAAGGGTCCACTCTCCGTT 2095464 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 | |||||| |||||||||||||| || || ||||| |||| || || || | Sbjct 2095465 CTTCTCAACACGCTTCATGAAAAGATCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGC 2095524 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 || |||| || | ||| ||||| ||| | ||||||||||| | || ||| ||||| Sbjct 2095525 GCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGCGTG 2095584 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATA 111729 ||| ||||| || |||| || | || || ||| ||| | |||| || || Sbjct 2095585 CCAAGGCTCTAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTACCACCCTGATCAACGTA 2095644 Query 111730 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 111789 ||| || ||| ||| || || || ||||| |||| || ||| | ||| ||| || || Sbjct 2095645 GCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGT 2095704 Query 111790 CCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCAT----CCCAATACCCC 111845 || ||| || | ||| ||| | | || |||| |||||||| | Sbjct 2095705 ACCAGCAATGTAGGAGCCAGTGG----CACGGATTCGGTGGGCATTGAGACCAATACCAC 2095760 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 ||||| ||| || || ||||| | | || || |||||||||||| || || Sbjct 2095761 CAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGT 2095820 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 ||||||| || | | | |||||| ||| | ||| ||| || ||||||||||||| Sbjct 2095821 CCTCCTTCATGTCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACCAGCATTGA 2095880 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023 ||||||| || | || || ||| | | |||| |||||| || |||||||||| Sbjct 2095881 AGAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGGACATAAGGTTATATGTCTCCAC 2095938 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| ||||| || || || |||||| || | || ||||||| ||||| ||| || Sbjct 2095939 GACACGCTCAATATCATCACCCCAGATGCCAATAGACACACGCATGATCATGTGCTGAGG 2095998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031505424800