Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq44 248 1e-60 seq61 123 3e-23 seq12 86.0 7e-12 >seq44 Length=2799272 Score = 248 bits (274), Expect = 1e-60 Identities = 940/1446 (65%), Gaps = 57/1446 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| ||| | || || || || || || ||||| |||| Sbjct 2095998 CCTCAGCACATGATCATGCGTGTGTCTATTGGCATCTGGGGTGATGATATTGAGCGTGTC 2095939 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||||||||| || |||||| |||| | | ||| || || | || ||||||| Sbjct 2095938 GTGGAGACATATAACCTTATGTCCAGCAAGTTCT--TCACCCATGCTTCCCCCACCCTCT 2095881 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||||||||| || |||||| | ||| |||||| | | | || ||||||| Sbjct 2095880 TCAATGCTGGTACCCCTCAACCCCAGCTTTCCTCATGCTTCTTGGTTGACATGAAGGAGG 2095821 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||||| || || | | ||||| || || ||| ||||| Sbjct 2095820 ACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGATGGCTG 2095761 Query 104460 GGGGTATTGGG----ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 | |||||||| |||| || | | ||| ||| | || ||| || Sbjct 2095760 GTGGTATTGGTCTCAATGCCCACCGAATCCGTG----CCACTGGCTCCTACATTGCTGGT 2095705 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || || ||| ||| | ||| || |||| ||||| || || || ||| ||| || ||| Sbjct 2095704 ACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCCCGC 2095645 Query 104576 TATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || || |||| | ||| ||| || || | || |||| || ||||| ||| Sbjct 2095644 TACGTTGATCAGGGTGGTAACAAGCGACCTGGTGCTTTTGCCATCTACCTAGAGCCTTGG 2095585 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| ||| || | ||||||||||| | || ||||| ||| | ||||||| || Sbjct 2095584 CACGCTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGC 2095525 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 |||||| || ||| || |||||||| || ||||| ||||||||| | |||||| || Sbjct 2095524 GCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGATCTTTTCATGAAGCGTGTTGAGAAG 2095465 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | || | ||| | || | || || || || |||||||| |||| | ||| Sbjct 2095464 AACGGAGAGTGGACCCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCTACGGT 2095405 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTG 104872 || |||||||| ||||| ||| ||||||||| |||||| || | | || | || Sbjct 2095404 GAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGG-GTC-GCAA--GTC 2095349 Query 104873 C--CA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | || ||| | || | | ||| | || || || || | || |||||||| || | | Sbjct 2095348 CATCAAGGCT-CAGAAGCTTTGGTATGCCATCCTTGAGGCCCAGACCGAGACCGGAAACC 2095290 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||||||||| || |||||||||| ||||| || || ||||| | ||| | Sbjct 2095289 CCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGGTACCA 2095230 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || || ||||| || || || ||| | || | | | |||||| |||| Sbjct 2095229 TCCGAAGCTCTAATCTGTGCACTGAGATCATCGAGTACTGTGCCCCTGATGAGGTCGCTG 2095170 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || ||||| || || | || || || | | || || || | || ||| Sbjct 2095169 TTTGCAACCTTGCCTCCCTTGCCCTGCC----TGCTTTCAT-CAACTACGATGAGGCTTG 2095115 Query 105108 --ATTA--TGAA-AAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 || | | || || || || | || | | |||| | ||| | |||| | Sbjct 2095114 CTATGACTTCAAGAAGCTGCATCAGGTCAGTCAGGTTGTCGTCCGCAACTTGAACAAGAT 2095055 Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 || ||| ||| ||||| || | ||||| || || ||| | ||||| || Sbjct 2095054 CATCGATGTCAATCACTACCCTGTACAAGAGGCTCGCAACAGCAACATGCGTCACCGACC 2094995 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTG 105281 || ||||| ||||| |||||||| || |||| ||| || || || ||| | |||| Sbjct 2094994 TATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTG-CGCATGCCCTTTG 2094936 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || ||| || | || |||| || || ||||||||||| || ||||| || | Sbjct 2094935 AGTCTCCCGAGGCTAGAGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGCTGCCC 2094876 Query 105342 TTGAGGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | || || | ||||||| ||| || ||||| || ||||| ||||||| Sbjct 2094875 TCACTGCCTCCGTGC--AGTTGGCCAAGGAGGAGGGTCCCTACTCTACCTTCAAGGGTTC 2094818 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC--A 105456 ||| || || | || | || || || || |||| |||| || |||| |||| | Sbjct 2094817 TCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGT-GGAACGT-----CAAGCCTTCCGA 2094764 Query 105457 C---TACGACTGGGA-AGCTCTCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511 | | |||||||| || || || | | | | ||| | ||| | ||||||||| Sbjct 2094763 CCTTTGGGACTGGGAGAGTCTTCGAGAGGATG--TTAAGACTCACGGTATCCGTAACAGT 2094706 Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571 || ||| | || || ||||| || ||| || | || || ||||||| || || ||| Sbjct 2094705 CTGCTCCTCGCCCCTATGCCTACTGCCAGTACTTCGCAGATTCTGGGTAACAACGAGTGC 2094646 Query 105572 TTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 105631 || || || ||||| | ||||| || | | | || ||| || || ||||| | || Sbjct 2094645 TTCGAGCCTTACACCTCCAACATTTACCAGCGCCGAGTCCTTGCTGGTGAGTTCCAGGTT 2094586 Query 105632 GTCAAC 105637 |||||| Sbjct 2094585 GTCAAC 2094580 >seq61 Length=1579179 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGT 94794 |||| || || | |||||| || || ||||| || ||| | | |||| | | | | Sbjct 1456801 TTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACTC-T 1456743 Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||||| |||| || | || || || ||| ||||||||||||||| |||| || Sbjct 1456742 ACCTTTGCCCAGCGTCTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGTGCC 1456683 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || | | || | |||||||||||||| || |||||||| ||||| |||||||||| Sbjct 1456682 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAAC 1456623 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||||||||| ||||| || ||| Sbjct 1456622 GAGCTCATCTCTCGTGATGAGGGTCTTCAC 1456593 >seq12 Length=4630793 Score = 86.0 bits (94), Expect = 7e-12 Identities = 179/261 (69%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 || ||||| ||||| ||||||| ||| || || ||| | ||| | | |||| ||| Sbjct 1666808 GCGTCAATTTCATCGATGAAGATGATACAGGGAGCATTCTTGCGGCCTTCGGCAAACAGA 1666749 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822 || || ||||| | || ||||| || |||||||| || || | | || ||| Sbjct 1666748 TCTCGCACACGAGAAGGACCGACACCCACGAACATCTCAACGAATTCGGAACCGCTCACA 1666689 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || | |||||| || ||| || || || |||| ||| || | |||||||| || Sbjct 1666688 CTGAA-GAAGGGCACTCCAGACTCGCCAGCCGTGGCCTTGGCAAGCAACGTCTTACCAGT 1666630 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 9939 ||| || || || |||| |||||||| |||||||||||||| |||| | || | Sbjct 1666629 ACCAGGAGGGCCAGCCAGGATAGCACCTCGAGGAATCTTGGCGCCCAGCTTCTCGAACT- 1666571 Query 9940 TCTCTCAGGTTGCTTAAGAAA 9960 ||||||| ||||| || || Sbjct 1666570 --TCTCAGGCTGCTTCAGGAA 1666552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260340682120