Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq55 141 3e-28 seq2 131 5e-25 seq11 114 4e-20 >seq55 Length=1684425 Score = 141 bits (156), Expect = 3e-28 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | || |||||||| ||||| |||||||| || || || || || Sbjct 936947 TTACTGACCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTA 937006 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 937007 GTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTC 937066 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATG 140682 ||| ||||| || || || || ||||| || ||| || || |||||||| | ||| || Sbjct 937067 AGGGGGAATACCCTCCTTGTCTTGAATCTT-GCTCTTCACGTTATCAATAGTGTCACTTG 937125 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || | |||||||| || || || || |||||||||||||| Sbjct 937126 ATTCGACCTCGAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCAT 937180 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || |||||||| || ||||| || ||||| Sbjct 937688 CATACCACCACGGAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATC 937747 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||||||||| || || ||||| || || | || ||||||||||| Sbjct 937748 AGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCAGG 937807 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | || || | || Sbjct 937808 AGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTC 937867 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| | || || || || || ||||| Sbjct 937868 AACCTCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 937918 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||| ||||| || ||||| || || || Sbjct 937178 CATACCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTC 937237 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || ||||| || || || ||||| || || || || ||||| Sbjct 937238 AGAAAGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGG 937297 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || |||||||| || ||| || ||||| || || | ||||||| || Sbjct 937298 AGGAATACCCTCCTTATCCTGGATCTTACTCTTCACATTGTCGATGGTGTCAGATGACTC 937357 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||||| || || || || || ||||| Sbjct 937358 AACCTCGAGGGTTATGGTCTTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 937408 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| || ||||| || || || || | Sbjct 937402 TTTGCATACCACCACGAAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGT 937461 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| ||||| ||||| || || ||||||||||| | || ||||| | Sbjct 937462 AGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGT 937521 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||||||||| || || ||||| || || | || || || || || | ||| || | Sbjct 937522 CAGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGG 937581 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| ||||| || | ||||| || || || || || || Sbjct 937582 ACTCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 937624 >seq2 Length=1465436 Score = 131 bits (144), Expect = 5e-25 Identities = 439/677 (65%), Gaps = 16/677 (2%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| | || || || |||| ||| | || ||||| Sbjct 1402740 GATATCATCGCCAACGACCAGGGTAACCGCACTACCCCCTCATTCGTCGGTTTCACCGAC 1402799 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | ||||| ||| | || || || || | || || || | || || Sbjct 1402800 ACCGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 1402859 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 1402860 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 1402913 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || || | | | | ||| | || || || | || Sbjct 1402914 GCCGATATGAAGCACTTCCCCTTCACCATCAT-CGACAAGGC--TGGCAAGCCCGTCATC 1402970 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || | || ||||| || || || | ||| | Sbjct 1402971 GAGGTTGAGTTCAAGGGTGAGAAGAAGAACTTCACTCCCGAGGAGATCTCTGCCATGATC 1403030 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | |||||| | || | ||||| || || | | || ||| Sbjct 1403031 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCCGTT 1403090 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || || || | |||||| || || || |||||||| | Sbjct 1403091 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCTGGTCTC 1403150 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || ||||| ||||| || ||||| || Sbjct 1403151 ATCGCCGGCCTCAACGTTCTCCGAATTATCAACGAGCCCACCGCTGCCGCCATTGCCTAC 1403210 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| || | | ||| || || | || || || ||| | ||||||||| Sbjct 1403211 GGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGT 1403270 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | || ||| Sbjct 1403271 ACCTTCGATGTTTCTCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCT 1403330 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| || || || || || ||||| || || || ||||| Sbjct 1403331 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAGCCACTTCGTTAAC 1403390 Query 349916 GAATTTAAGCGTCAAGC 349932 || || || || ||||| Sbjct 1403391 GAGTTCAAACG-CAAGC 1403406 Score = 102 bits (112), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | ||||| ||| || || | |||||||| || |||||||| || Sbjct 1126803 CGCGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAAGTGTTC 1126859 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| || || | ||| ||||||||||| Sbjct 1126860 AGTGTCATCTGGGTAGCGGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCA 1126919 Query 377578 CCAGGATTGACAATAGC 377594 ||||| || || | ||| Sbjct 1126920 CCAGGGTTCACGAAAGC 1126936 Score = 98.7 bits (108), Expect = 3e-15 Identities = 188/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||| ||||| |||| ||| || || || Sbjct 1127564 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATGTAACCTGTTTCGGCAGTCTTGACCGC 1127623 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| || || |||| ||||| Sbjct 1127624 AGTATCAATAAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTAGGGGTAAG 1127683 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| || | || |||||| || || | || | || || | ||| | || || Sbjct 1127684 GCCACGAAGGTAAGAGTTCTCAACGAAACCACGAGCTTCGGGTGAGTAATCGTCCTTGGT 1127743 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 ||||||| | || || | || || || | ||||| ||||| || |||||| | || Sbjct 1127744 GAAATGAGGCAGGGTGCGGTACTTGAAACCGAAAGGAATACGTTTGCCTTCAACAATTTG 1127803 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| ||| || | |||||| Sbjct 1127804 CTGACCGACAAGAGCAG---TCATCTGTGAAATATT 1127836 >seq11 Length=779747 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 735671 CATACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 735612 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 735611 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 735552 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || ||||| | || || | || Sbjct 735551 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 735492 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 735491 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 735441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253176905589