Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq44 251 8e-62 >seq44 Length=2799272 Score = 251 bits (278), Expect = 8e-62 Identities = 491/720 (68%), Gaps = 18/720 (3%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||||||| ||||| || || | ||| | |||| ||| || || || | || || Sbjct 2095945 GCGTGTCGTGGAGACATATAACCTTATGTCCAGCAAGTTCTTCACCCATGCTTCCCCCAC 2095886 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| ||||| |||||||| ||| || ||| | || |||||| |||| | ||||| Sbjct 2095885 CCTCTTCAATGCTGGTACCCCTCAACCCCAGCTTTCCTCATGCTTCTTGGTTGACATGAA 2095826 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| || ||||| ||||| || || |||||| |||||| || |||||| Sbjct 2095825 GGAGGACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGAT 2095766 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | | |||||||| ||| || | ||| | | || ||||||| | ||| | || Sbjct 2095765 GGCTGGTGGTATTGGTCTCAA-TGCCC-ACCGAATCCGTGCCACTGGCTCCTACATTGCT 2095708 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| || | || | || |||||||| || |||||||||||||| ||| Sbjct 2095707 GGTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCC 2095648 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || ||||| | ||||||||| ||||| || | || ||||||||||| ||||| Sbjct 2095647 CGCTACGTTGATCAGGGTGGTAACAAGCGACCTGGTGCTTTTGCCATCTACCTAGAGCCT 2095588 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| || | | ||||| || || || || ||| || ||| | || ||| | Sbjct 2095587 TGGCACGCTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTC 2095528 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||| |||||||| || || ||||| || || || |||||| | || ||| Sbjct 2095527 CGCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGATCTTTTCATGAAGCGTGTTGAG 2095468 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTA 53769 ||| ||| |||||| ||| |||||||| ||||||||||| || | | | | || ||| Sbjct 2095467 AAGAACGGAGAGTGGACCCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTG-CTA 2095409 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAA 53823 |||||| |||||| | | | || || |||| | || | |||| ||| Sbjct 2095408 CGGTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGGGTCGC----- 2095354 Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883 ||| ||||||| | || | ||| |||| ||||| || |||| ||||| || Sbjct 2095353 -AAGTCCATCAAGGCTCAGAAGCTTTGGTATGCCATCCTTGAGGCCCAGACCGAGACCGG 2095295 Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || || | |||| ||||||||| | ||| |||||||||||||||||| |||| Sbjct 2095294 AAACCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGG 2095235 Score = 176 bits (194), Expect = 5e-39 Identities = 223/305 (73%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357 ||||||||| || ||||||||| || |||||||| |||||| ||||| || | ||| Sbjct 640478 TAGGCGAGTAAATGTGTAACGAGGACTAGCAGCATCAGAGCCACCGGCAAGTCGAGAACC 640419 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| | |||||| ||||||||| ||| | |||||| | |||||||||||| ||||| | Sbjct 640418 GAAGTTTCCACTGGGCTCCAAGCAGTTGATGTTGTTTGAGCCCACAAAGTTCTGAGCAAG 640359 Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 | | ||| || || || | |||||| ||||| |||||||| || || | ||| Sbjct 640358 GCCTATAATGGTCTGCTGAAGAGACTGCTCACCGTGGTGGTACGCCGTTTGTTCGGACAC 640299 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCA 117535 || || |||| | | | |||||| | || |||| | ||| |||||| ||| ||| Sbjct 640298 ATAACCAGCCAATTCAACAACCTTCTTATCCTTGAC--AATGTTTCTCTTGAAGCAAGCA 640241 Query 117536 TAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTG 117595 || || ||||||||||||| ||||| | ||||||| ||| ||||| || ||| || Sbjct 640240 TATATGACCTTGCGCTGACCAGGCTTGAAACCATCCAAAACGGACGGGATGGATCGCATG 640181 Query 117596 ATGTC 117600 |||| Sbjct 640180 TTGTC 640176 Score = 98.7 bits (108), Expect = 1e-15 Identities = 195/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 152036 TGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGG 152095 |||| || | || || ||||| |||||| || || || | || || | |||| || Sbjct 640464 TGTAACGAGGACTAGCAGCATCAGAGCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGG 640405 Query 152096 GCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGC 152155 |||| | | ||||| |||||| | |||||| || |||||||| | | ||| || Sbjct 640404 GCTCCAAGCAGTTGATGTTGTTTGAGCCCACAAAGTTCTGAGCAAGGCCTATAATGGTCT 640345 Query 152156 CCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACT 152215 ||| ||| | ||||||||||| |||||||| || || | | || || ||||| | Sbjct 640344 GCTGAAGAGACTGCTCACCGTGGTGGTACGCCGTTTGTTCGGACACATAACCAGCCAATT 640285 Query 152216 GCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCT 152275 | |||||| | ||| | | ||| |||||| || || || || |||||||||| Sbjct 640284 CAACAACCTTCTTATCCTTGACAATGTTTCTCTTGAAGCAAGCATATATGACCTTGCGCT 640225 Query 152276 GGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 | || || ||||| |||| ||| || || || ||| || |||| Sbjct 640224 GACCAGGCTTGAAACCATCCAAAACGGACGGGATGGATCGCATGTTGTC 640176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 18/192 (9%) Strand=Plus/Minus Query 119008 CATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACCAT---CACTAATTTTG----- 119059 |||||||| |||||||| ||| |||| ||| ||| |||| |||| ||| | Sbjct 638645 CATGTTGTTGGTCCAAGTCTGCTTGTA--TCT-CTTGCCATGCTCACTGTTTTGGCACTC 638589 Query 119060 -ATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCG---ACC 119115 | || |||| | |||||| |||||| |||||||||||||| ||||| || ||| Sbjct 638588 GAGATTGAATTCAGTACTGAAGACGTTGCACAGCTTGGCACCGTAACCGTTACGGCCACC 638529 Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 | ||||| || ||| ||||||| | ||||||| | | ||| | || || ||||| Sbjct 638528 AACGGTC---TTCTTCTCATCGTCGTCGAAGTTGGAACCCGCCAACAAATGTCCGAAGAT 638472 Query 119176 GAGCTCGGGGAT 119187 ||||| ||||| Sbjct 638471 AAGCTCAGGGAT 638460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215569067400