Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq44 334 9e-87 seq55 190 2e-43 seq11 176 5e-39 seq1 129 7e-25 >seq44 Length=2799272 Score = 334 bits (370), Expect = 9e-87 Identities = 946/1429 (66%), Gaps = 58/1429 (4%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || ||| || ||| | || | ||| | ||||||||||| || |||| Sbjct 2094593 AACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTCGAAGCACTCG 2094652 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || || ||||| | || || || || ||||| ||| ||| | ||| || Sbjct 2094653 TTGTTACCCAGAATCTGCGAAGTACTGGCAGTAGGCATAGGGGCGAGGAGCAGACTGTTA 2094712 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAAC---CCCAACG 80532 || | ||||| |||| | |||||| || | | || || | ||| | || | Sbjct 2094713 CGGATACCGTGAGTCTTAACATCCTCTCGAAGA-CTCTCCCAGTCCCAAAGGTCGGAAGG 2094771 Query 80533 CTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACG 80590 || |||| |||||||||| ||| | || ||||| || || ||||| ||| ||| | Sbjct 2094772 CT-TGACGTTCCACATGTCGAACTGGAGAATACCCTCAGAGGCGGGAGAACCCTTGAAGG 2094830 Query 80591 TCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAA 80649 | ||| || |||||| |||||||| || |||| || | ||||| ||||| || Sbjct 2094831 TAGAGTAGGGACCCTCCTCCTTGGCCAACTG-CACGGAGGCAGTGAGGGCAGCGTGGTAG 2094889 Query 80650 ATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCC 80709 ||| |||||||| |||||| | | | |||| || || || | || || | Sbjct 2094890 ATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCGGGAGACTCAAAGGGCATGCGC 2094949 Query 80710 ATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTG 80769 | | ||| | ||||| || ||||| || || | |||| || ||||| ||| || Sbjct 2094950 AGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCGATAGGTCGGTGACGCATG 2095009 Query 80770 TTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATT---ATCGATGACGCGGTTCAG 80825 || | | || ||||| | | ||||| || ||| |||||||| ||||| Sbjct 2095010 TT-GCTGTTGCGAGCCTCTTGTACAGGGTA---GTGATTGACATCGATGATCTTGTTCAA 2095065 Query 80826 GTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATT--GGTTCCCC 80883 |||||| |||||| | | || | ||| || |||| ||||| | | || | Sbjct 2095066 GTTGCGGACGACAACCTGACTGACCTGATGCAGCTTCTTGAAGTCATAGCAAGCCTCATC 2095125 Query 80884 ----TTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG- 80938 || | || || || ||| ||||| || || ||||| || || ||||| |||| Sbjct 2095126 GTAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGG 2095185 Query 80939 --CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGG 80994 || | ||| ||||| ||| || ||||||| |||||| ||| || ||||| ||| Sbjct 2095186 GGCA-CAGTA--CTCGATGATCTCAGTGCACAGATTAGAG--CTTCGGATGGTACCGAGG 2095240 Query 80995 TTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTC 81054 || |||||||| |||| ||| || || |||||||| |||| | ||| | |||||| Sbjct 2095241 TTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTC 2095300 Query 81055 TCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAAT 81114 ||| ||| | || |||||||| | ||||| || | ||||||| |||||| Sbjct 2095301 TCGGTCTGGGCCTCAAGGATGGCATACCAAAGCTTCTGAGCCTTGATGGACTTGCGACCC 2095360 Query 81115 TTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGT 81173 || ||||| | | ||||| |||| | || |||| |||||| | ||| | | Sbjct 2095361 TTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGT-CGGC 2095419 Query 81174 GAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTT 81233 || | ||||||||||| |||||||| ||| ||| || || ||||| ||| ||| Sbjct 2095420 AAGACCAGGGCACTCGTTGGGGCACATAAGGGTCCACTCTCCGTTCTTCTCAACACGCTT 2095479 Query 81234 CATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATC 81293 ||||||| ||||||||||||||||| ||||||||||||| ||| ||||||| | Sbjct 2095480 CATGAAAAGATCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTT 2095539 Query 81294 ACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353 ||| ||||| || | || || || || | || || || ||||| ||||| || || Sbjct 2095540 ACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCTAGGTA 2095599 Query 81354 CACGGCGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGC 81407 | ||| | | || | |||| | |||||||| | ||||| |||||||| Sbjct 2095600 GATGGCAAAAGCACCAGGTCGCTTGTTA---CCACCCTGATCAACGTAGCGGGCAGTGTT 2095656 Query 81408 GTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACG 81467 ||| || ||||| | |||||| | | ||| | || |||||| ||||| | || Sbjct 2095657 GTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTA 2095716 Query 81468 CGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAA 81525 || || |||| || | | || |||| ||||| || ||||| | | ||| ||| Sbjct 2095717 GGAGCCAGTGGCACGGATTCGGTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAA 2095774 Query 81526 ATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCA 81585 ||| ||||| || | ||| ||||| || || || ||||| || | ||||||||| Sbjct 2095775 ATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATGTCA 2095834 Query 81586 AGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG-----CCGGCATTGAACAGTGTTG 81640 | |||||| || || | ||| || ||||| || |||||||| || || | Sbjct 2095835 ACCAAGAAGCATGAGGAAAGCTGGGG-----TTGAGGGGTACCAGCATTGAAGAGGGTGG 2095889 Query 81641 GGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAA 81700 ||| || || |||| | | | ||||| |||| ||| || ||| ||| || || Sbjct 2095890 GGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTTATATGTCTCCACGACACGCTCAA 2095949 Query 81701 TATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 |||| ||||| || || |||| |||||||| | ||||| ||| || Sbjct 2095950 TATCATCACCCCAGATGCCAATAGACACACGCATGATCATGTGCTGAGG 2095998 Score = 149 bits (164), Expect = 7e-31 Identities = 240/339 (71%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| ||||| || ||| ||| || |||||||| ||||||||||| ||||| Sbjct 640181 CATGCGATCCATCCCGTCCGTTTTGGATGGTTTCAAGCCTGGTCAGCGCAAGGTCATATA 640240 Query 32019 CGCCTGCCTCAAGAAGAAC-CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACG 32077 || ||| |||||| ||| |||| || || | |||||| | | || | || || | Sbjct 640241 TGCTTGCTTCAAGAGAAACATTGTCAAG-GATAAGAAGGTTGTTGAATTGGCTGGTTATG 640299 Query 32078 TGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACC 32137 || | || |||||||| || |||||||| ||| ||| || ||| |||||| | || Sbjct 640300 TGTCCGAACAAACGGCGTACCACCACGGTGAGCAGTCTCTTCAGCAGACCATTATAGGCC 640359 Query 32138 TTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTG 32197 |||||||||||||||| || |||| ||| | |||| | ||||| |||| | || | Sbjct 640360 TTGCTCAGAACTTTGTGGGCTCAAACAACATCAACTGCTTGGAGCCCAGTGGAAACTTCG 640419 Query 32198 GGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCG--TCT 32255 | | || || ||||||||| |||||||| || | ||||||| || || || | | Sbjct 640420 GTTCTCGACTTGCCGGTGGCTCTGATGCTGCTAGTCCTCGTTACACATTTACTCGCCTAT 640479 Query 32256 CGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGA 32294 ||| |||| | | |||||||| || ||||| ||| || Sbjct 640480 CGC-CCTTTG-CCCGCAAGATCTTTCACCCGATGGATGA 640516 >seq55 Length=1684425 Score = 190 bits (210), Expect = 2e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||||||||| |||| ||| | Sbjct 937624 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGATACCATCGAC 937565 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || ||||||||||||||||||||||| ||||||||||| | || Sbjct 937564 AACGTCAAGTCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGCTTGATC 937505 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || ||||| || ||||| || |||| ||||| Sbjct 937504 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAG 937445 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| ||| | || ||||| ||||| Sbjct 937444 TCCACCCTTCATCTCGTCCTCCGCCTTCGTGGTGG 937410 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||||||||| || || || |||||||||||| | Sbjct 937408 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACCATAACCCTCGAGGTTGAGTCATCT 937349 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| ||| || ||||| |||||||| |||||||| ||||| Sbjct 937348 GACACCATCGACAATGTGAAGAGTAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAA 937289 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || |||||||| ||||| | |||||||| | ||||| || Sbjct 937288 CAGCGACTTATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTTTCTGACTACAAC 937229 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || | || | ||||| || ||||| Sbjct 937228 ATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGG 937182 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || || || |||||||| || || ||||| || ||| || Sbjct 937180 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACTATCACCCTCGAGGTCGAATCAAGT 937121 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| || ||||| ||||||||||| ||||| || |||||| Sbjct 937120 GACACTATTGATAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 937061 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| || ||||| | ||| || | ||| ||||| || Sbjct 937060 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGC-GACTACAA 937002 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || ||||| || || | || ||||| || || || Sbjct 937001 CATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGTCA 936951 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 937921 ATCATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTTGAGTCT 937862 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || ||||||||||||||||| || ||||| || Sbjct 937861 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGAT 937802 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | ||||| ||||| ||||| || || |||| || ||||| | || || Sbjct 937801 CAGCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTAC 937742 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| || || || ||||| ||| | || || || ||||| Sbjct 937741 AACATTCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGCCTCCGTGGTGG 937692 >seq11 Length=779747 Score = 176 bits (194), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 735438 ATCATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 735497 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| || | ||| | || || |||||||||||||| ||||| || ||| Sbjct 735498 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 735557 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581 |||||||| || || |||||||||||||| |||||||||| || ||||| ||| ||||| Sbjct 735558 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTA 735616 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| |||||||| || || ||| | || || || ||||| Sbjct 735617 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGCCTCCGTGGTGG 735667 >seq1 Length=5443851 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 4488452 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 4488511 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 4488512 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 4488571 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 4488572 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 4488631 Query 27595 G 27595 | Sbjct 4488632 G 4488632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309950880560