Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq55 190 5e-43 seq11 170 4e-37 seq1 138 3e-27 seq44 98.7 2e-15 >seq55 Length=1684425 Score = 190 bits (210), Expect = 5e-43 Identities = 168/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || ||||| |||||||| || |||||||| || || || ||||| Sbjct 937415 ACGAAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT 937474 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| || ||||| | ||| || ||||||||||||| ||| Sbjct 937475 TCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATTCC 937534 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| |||||||| || ||| |||||||| || Sbjct 937535 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCAACCTCAAG 937594 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| ||||| || ||||| ||||| || Sbjct 937595 AGTGATGGTCTTGCCAGTGAGGGTCTTGAC 937624 Score = 179 bits (198), Expect = 9e-40 Identities = 175/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||||| || ||||||||||| || ||||| || |||||||| || || | ||| | Sbjct 936959 ACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAA-AG 937017 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || || ||||||||||| || ||||||||||| || || |||||||| |||| | Sbjct 937018 TGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATAC 937077 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | |||||||| || ||||| |||||||| || || |||||| ||| ||||||| Sbjct 937078 CCTCCTTGTCTTGAATCTTGCTCTTCACGTTATCAATAGTGTCACTTGATTCGACCTCGA 937137 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| |||||||| ||||||||||| ||||| | |||||| Sbjct 937138 GGGTGATAGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCAT 937180 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || || ||||| || || | |||||| | ||| || Sbjct 937197 AGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCC 937256 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| ||||||||||| || |||||||||||||||| || ||||| ||| Sbjct 937257 TCCAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTATCC 937316 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||||| ||||||||||| || || ||| Sbjct 937317 TGGATCTTACTCTTCACATTGTCGATGGTGTCAGATGACTCAACCTCGAGGGTTATGGTC 937376 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | ||||| Sbjct 937377 TTGCCGGTTAAGGTCTTGACGAAGATTTGCAT 937408 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || || ||||| ||||| | ||||| | |||||| Sbjct 937707 AGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCT 937766 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || | || || || |||||||| | || ||||||||| Sbjct 937767 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 937826 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || |||||||| || ||||| ||| Sbjct 937827 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCTAGGGTGATGGTC 937886 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | ||||| Sbjct 937887 TTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 937918 >seq11 Length=779747 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || ||||| | ||||| Sbjct 735652 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 735593 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||||||| || || ||||| || |||| || ||||||||| Sbjct 735592 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 735533 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| || || ||||| || ||||||||| Sbjct 735532 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 735473 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 735472 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 735441 >seq1 Length=5443851 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | ||||| || |||||||| || |||||||| Sbjct 4488630 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 4488571 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || |||||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 4488570 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4488511 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 4488510 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 4488452 >seq44 Length=2799272 Score = 98.7 bits (108), Expect = 2e-15 Identities = 182/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| | | | |||||| ||||| |||||||| |||| Sbjct 2095240 GTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGT 2095299 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | || ||| | || ||| || |||||||| ||| || || | ||| | Sbjct 2095300 CTCGGTCTGGGCCTCAAGGATGGCATACCAAAGCTTCTGAGCCTTGATGGACTTGCGACC 2095359 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || ||||| |||||||||| | |||||| |||| || || || ||| || | Sbjct 2095360 CTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGC 2095419 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 ||||| || ||| |||||||| | || |||||| |||| | || || || || Sbjct 2095420 AAGACCAGGGCACTCGTTGGGGCACATAAGGGTCCACTCTCCGTTCTTCTCAACACGCTT 2095479 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGC 178359 |||||| || |||| | |||||| ||| Sbjct 2095480 CATGAAAAGATCAGGGATCCAGAGGGC 2095506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151064346995