Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31]
63 sequences; 42,866,936 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq11 116 9e-21
seq55 109 1e-18
seq44 96.9 8e-15
seq1 89.7 1e-12
>seq11
Length=779747
Score = 116 bits (128), Expect = 9e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || ||||| ||||| || ||||||||||| ||| | || |
Sbjct 735659 GAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 735600
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || || |||||||| | ||||||||||| | || || ||
Sbjct 735599 GCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTC 735540
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | |||| ||| ||| || ||||| ||
Sbjct 735539 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGT 735480
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||| ||||| | ||||||
Sbjct 735479 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 735441
>seq55
Length=1684425
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| |||||||| || ||||| || ||||||||||| ||||| | |||| |||||
Sbjct 937424 GAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATC 937483
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| | | ||||||||| | | ||||| ||||| ||
Sbjct 937484 CTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATTCCCTCCTTGTC 937543
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | | || || ||| || |||||||| || ||
Sbjct 937544 CTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCAACCTCAAGAGTGATGGT 937603
Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094
||||| ||||| ||||| ||||
Sbjct 937604 CTTGCCAGTGAGGGTCTTGACGA 937626
Score = 107 bits (118), Expect = 4e-18
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| ||| ||||| ||||| |||||||| || ||||||||||| ||| ||||| |
Sbjct 936963 AGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGA 937022
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|| || || || || || ||||||||||| | ||||||||| | | || || |||
Sbjct 937023 CCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCC 937082
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGA 152063
|| |||||||| || || || | || | |||| ||| || || || ||
Sbjct 937083 TTGTCTTGAATCTTGCTCTTCACGTTATCAATAGTGTCACTTGA---TTCGACCTCGAGG 937139
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || ||||||||||| || || | ||||||
Sbjct 937140 GTGATAGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCAT 937180
Score = 102 bits (112), Expect = 2e-16
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| ||||| || |||||||| || || ||||||||||| | | || |
Sbjct 937700 GAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCG 937759
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || || || ||||| || | | |||||| || | | ||| || ||
Sbjct 937760 GCCATCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTC 937819
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || |||||| | || | |||| ||| ||| || || || ||
Sbjct 937820 CTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCTAGGGT 937879
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| || | ||||| ||||||| |||||
Sbjct 937880 GATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 937918
>seq44
Length=2799272
Score = 96.9 bits (106), Expect = 8e-15
Identities = 188/275 (68%), Gaps = 2/275 (1%)
Strand=Plus/Minus
Query 115635 GCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTC 115694
||| | |||| |||||||||| |||||||| || || |||||| ||||| |||
Sbjct 2095506 GCCCTCTGGATCCCTGATCTTTTCATGAAGCGTGTTGAGAAGAACGGAGAGTGGACCCTT 2095447
Query 115695 TTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTT 115754
| || ||||| || ||||||||||| || || ||| |||||||||| ||
Sbjct 2095446 ATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCTACGGTGAAGAGTTTGAGGCCCTC 2095387
Query 115755 TACGAAAGGTACGAGAAAG-AGGGAAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTG 115813
||||| | |||||||| | ||| ||| | | || | | ||||| || | |||||
Sbjct 2095386 TACGAGAAGTACGAGAGGGAAGGTAAGGGTCGCAA-GTCCATCAAGGCTCAGAAGCTTTG 2095328
Query 115814 GCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAAAGATGC 115873
| || ||||||| | ||| | ||| ||||| ||||| || ||||| |||||
Sbjct 2095327 GTATGCCATCCTTGAGGCCCAGACCGAGACCGGAAACCCCTTCATGCTTTACAAGGATGC 2095268
Query 115874 AGTTTGTCGAAAGAGCAATCAAAAGAATTTCGGTA 115908
| || |||||||| || ||||| ||||||
Sbjct 2095267 CTGTAACCGCAAGAGCAACCAGAAGAACCTCGGTA 2095233
>seq1
Length=5443851
Score = 89.7 bits (98), Expect = 1e-12
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | ||||| ||||| || || || || ||||||||
Sbjct 4488630 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 4488571
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||| ||||||| | || || ||||| || || || || |||||| | ||
Sbjct 4488570 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4488511
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| || ||| || || || || || || |||||||| || ||||| |||||
Sbjct 4488510 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 4488452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153819868650273
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |