Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1076 214 2e-50 >seq1076 Length=4255 Score = 214 bits (236), Expect = 2e-50 Identities = 598/910 (66%), Gaps = 12/910 (1%) Strand=Plus/Minus Query 53756 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 53815 || || ||||||||||| || | |||||| || | || | ||| || ||||| Sbjct 2047 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1988 Query 53816 TTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA 53875 ||| || |||||||| || || |||||||| | || || ||| |||||| || | | Sbjct 1987 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1928 Query 53876 ATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCG 53932 || || | ||| | ||||||| || | ||| | ||| | ||| ||| Sbjct 1927 ATGGCGTACCAAAGCTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTCG 1871 Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 || | |||| || ||||| ||||| | | | | | ||||| || || Sbjct 1870 TACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCG 1811 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 | || ||||||| | ||| || |||| | | || |||||||| || |||||||| Sbjct 1810 TTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGG 1751 Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112 |||||||| || | || ||||| | || | ||||| || || ||||| Sbjct 1750 ATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGG 1691 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 ||||| ||||| | | | |||||| ||||| || || | ||| |||| | | | || Sbjct 1690 AGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCG 1631 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 || || ||||| || ||||| || | || | ||| ||||| || | || | | ||| Sbjct 1630 GGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATA 1571 Query 54233 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 54292 |||| ||||||||| |||| ||| ||||| |||| ||| || ||| | ||||||||| Sbjct 1570 GGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATA 1511 Query 54293 T--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 | | ||| |||||| || || || ||||| || ||||| | || || || | Sbjct 1510 CGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 1453 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 ||||| ||||| ||||| ||||| || ||| |||| | || | || || || | Sbjct 1452 GAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATA 1393 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 |||| | || ||| || ||||| || | || || ||||| ||||| || | || Sbjct 1392 ATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGC 1333 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACT 54529 ||| | |||||||| ||||| | || || ||||| || || | || || Sbjct 1332 TAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACA 1274 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589 | |||||||| | |||||||||||| | || || ||||| || ||||| || | | Sbjct 1273 GACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGAGG 1214 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 54649 || ||| |||||||| || || ||||| || | |||| || || || || || | | Sbjct 1213 TATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACA 1154 Query 54650 ATAACTGAGT 54659 || | |||| Sbjct 1153 ATGGCAGAGT 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593703780930480