Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq994 104 3e-17 seq886 93.3 5e-14 seq586 84.2 3e-11 >seq994 Length=39861 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || | || || |||||||| ||||| || Sbjct 17445 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 17386 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 17385 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 17327 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 17326 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 17267 Query 43171 CAAAGATTTGCATTTT 43186 | || || ||||| || Sbjct 17266 CGAAAATCTGCATCTT 17251 >seq886 Length=31666 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || || || || || |||| || || ||||| ||||| || Sbjct 10444 TCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 10503 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | || |||||||||| ||| | || | | | | | Sbjct 10504 ATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTCGACTTAACATT 10562 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||| ||| || || || | |||||||| ||||| || || ||||| || Sbjct 10563 GTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 10622 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || | || || | ||||||||||||||| Sbjct 9987 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAA 10046 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | | |||||||||| ||| | || | | ||| Sbjct 10047 GATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGT 10105 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || || | |||||||| || || || || ||||| | Sbjct 10106 TGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTAAGGGTCTTCA 10165 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 10166 CGAAGATCTGCAT 10178 >seq586 Length=19764 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || || || || | ||||| || | || || ||||||||||||||||| | Sbjct 8615 CCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 8674 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | |||||||| ||||| | || | | |||||||||| ||| || |||| | Sbjct 8675 TCAGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 8734 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 8735 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 8794 Query 43174 A 43174 | Sbjct 8795 A 8795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571800438324280