Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1076 188 9e-43
seq179 109 7e-19
>seq1076
Length=4255
Score = 188 bits (208), Expect = 9e-43
Identities = 606/929 (65%), Gaps = 20/929 (2%)
Strand=Plus/Minus
Query 62994 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63053
|| || ||||||||||| || | ||| || || | || | ||| || |||||
Sbjct 2047 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1988
Query 63054 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63113
||| || |||||||| || || |||||||| | || || ||| |||| | || | |
Sbjct 1987 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1928
Query 63114 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----T 63168
|| || | ||| | | || ||||||| || | ||| | |||| | || |
Sbjct 1927 ATGGCGTACCAAA-GCTTCTGAGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCCTTCT 1873
Query 63169 CGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACA 63226
|||| | ||| | | | |||||||| ||||| | | | | | | ||| ||
Sbjct 1872 CGTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCA 1815
Query 63227 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63286
|| | || ||||||| | ||| || |||| | | || |||||||| || |||||
Sbjct 1814 CTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATC 1755
Query 63287 AGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT 63346
||| |||||||| || | || ||||| | | | ||||| || || |||||
Sbjct 1754 AGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTT 1695
Query 63347 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63406
||||| ||||| | | | |||||| ||||| || || | ||| ||||| | | |
Sbjct 1694 ACGGAGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGC 1635
Query 63407 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63466
|| || || ||||| || ||||| || | || | ||| ||||| || | || | |
Sbjct 1634 ACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAG 1575
Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526
||| |||| |||||| || ||| |||| |||||||||| ||| || ||| | |||||
Sbjct 1574 CATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACG 1515
Query 63527 AATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63584
|||| | | ||| |||||| || || || ||||| || ||||| | || ||
Sbjct 1514 AATACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTC 1457
Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644
|| | || || ||||| || || || || || || |||| | || | || ||
Sbjct 1456 TTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGAT 1397
Query 63645 GACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63704
|| | |||| | ||| ||| || ||||| || | || || ||||| ||||| || |
Sbjct 1396 GATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAAC 1337
Query 63705 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCC 63763
|| ||| | |||||||| ||||| | || || ||||| || || | ||
Sbjct 1336 TTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACC 1278
Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823
|| | |||||||| | |||||||||||| | || ||||| || || ||||| |
Sbjct 1277 AACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAG 1218
Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883
| ||| ||| |||||||| || || ||||| || | |||| || || || || ||
Sbjct 1217 GAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATA 1158
Query 63884 AATAATAACCGAATTGAGCTTATCCTTAT 63912
| ||| | || | | || |||||||
Sbjct 1157 GACAATGGCAGAGTCCAACTCCTCCTTAT 1129
>seq179
Length=39909
Score = 109 bits (120), Expect = 7e-19
Identities = 353/544 (65%), Gaps = 8/544 (1%)
Strand=Plus/Plus
Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655
||| ||||||||||| | | || | ||||| || || || || || ||||| || ||
Sbjct 35465 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 35524
Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715
|||||| || ||||| || || || ||||| | || |||||||| || || || ||
Sbjct 35525 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCTCAACAGC 35584
Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33771
||||||||||| || | || || | || | | || || ||||| | || |
Sbjct 35585 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 35643
Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831
|||| || ||||||||| | || || || || || ||||| || |||||||| ||
Sbjct 35644 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATATGTTC 35703
Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891
| || || | || || ||||| | || || | || || |||||||
Sbjct 35704 GCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGT 35763
Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951
| || || ||||| || |||||||| || | |||||||| ||||| || || ||
Sbjct 35764 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 35823
Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011
||||| || | | || || || || || |||||| ||| || || || || | |
Sbjct 35824 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 35883
Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068
|| | || | | || || | || | | || ||||| || | | ||| |
Sbjct 35884 TGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTGAAGATCCT 35943
Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128
| || | ||| | || || | ||||| || || ||||| ||||| || ||||| | ||
Sbjct 35944 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 36003
Query 34129 AGAT 34132
| ||
Sbjct 36004 AAAT 36007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629798697599280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |