Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1076 188 9e-43 seq179 109 7e-19 >seq1076 Length=4255 Score = 188 bits (208), Expect = 9e-43 Identities = 606/929 (65%), Gaps = 20/929 (2%) Strand=Plus/Minus Query 62994 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63053 || || ||||||||||| || | ||| || || | || | ||| || ||||| Sbjct 2047 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1988 Query 63054 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63113 ||| || |||||||| || || |||||||| | || || ||| |||| | || | | Sbjct 1987 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1928 Query 63114 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----T 63168 || || | ||| | | || ||||||| || | ||| | |||| | || | Sbjct 1927 ATGGCGTACCAAA-GCTTCTGAGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCCTTCT 1873 Query 63169 CGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACA 63226 |||| | ||| | | | |||||||| ||||| | | | | | | ||| || Sbjct 1872 CGTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCA 1815 Query 63227 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63286 || | || ||||||| | ||| || |||| | | || |||||||| || ||||| Sbjct 1814 CTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATC 1755 Query 63287 AGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT 63346 ||| |||||||| || | || ||||| | | | ||||| || || ||||| Sbjct 1754 AGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTT 1695 Query 63347 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63406 ||||| ||||| | | | |||||| ||||| || || | ||| ||||| | | | Sbjct 1694 ACGGAGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGC 1635 Query 63407 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63466 || || || ||||| || ||||| || | || | ||| ||||| || | || | | Sbjct 1634 ACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAG 1575 Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526 ||| |||| |||||| || ||| |||| |||||||||| ||| || ||| | ||||| Sbjct 1574 CATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACG 1515 Query 63527 AATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63584 |||| | | ||| |||||| || || || ||||| || ||||| | || || Sbjct 1514 AATACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTC 1457 Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || | || || ||||| || || || || || || |||| | || | || || Sbjct 1456 TTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGAT 1397 Query 63645 GACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63704 || | |||| | ||| ||| || ||||| || | || || ||||| ||||| || | Sbjct 1396 GATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAAC 1337 Query 63705 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCC 63763 || ||| | |||||||| ||||| | || || ||||| || || | || Sbjct 1336 TTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACC 1278 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 || | |||||||| | |||||||||||| | || ||||| || || ||||| | Sbjct 1277 AACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAG 1218 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 | ||| ||| |||||||| || || ||||| || | |||| || || || || || Sbjct 1217 GAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATA 1158 Query 63884 AATAATAACCGAATTGAGCTTATCCTTAT 63912 | ||| | || | | || ||||||| Sbjct 1157 GACAATGGCAGAGTCCAACTCCTCCTTAT 1129 >seq179 Length=39909 Score = 109 bits (120), Expect = 7e-19 Identities = 353/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | | || | ||||| || || || || || ||||| || || Sbjct 35465 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 35524 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 35525 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCTCAACAGC 35584 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33771 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 35585 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 35643 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || ||||||||| | || || || || || ||||| || |||||||| || Sbjct 35644 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATATGTTC 35703 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | || || | || || ||||| | || || | || || ||||||| Sbjct 35704 GCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGT 35763 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 35764 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 35823 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||||| || | | || || || || || |||||| ||| || || || || | | Sbjct 35824 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 35883 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || | || | | || || | || | | || ||||| || | | ||| | Sbjct 35884 TGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTGAAGATCCT 35943 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 35944 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 36003 Query 34129 AGAT 34132 | || Sbjct 36004 AAAT 36007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629798697599280