Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1076 214 2e-50
>seq1076
Length=4255
Score = 214 bits (236), Expect = 2e-50
Identities = 600/911 (66%), Gaps = 14/911 (2%)
Strand=Plus/Minus
Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846
|| || ||||||||||| || | |||||| || | || | ||| || |||||
Sbjct 2047 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1988
Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906
||| || |||||||| || || |||||||| | || || ||| |||| | || | |
Sbjct 1987 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1928
Query 65907 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TC 65962
|| || | ||| | | || ||||||| || | ||| | ||| | ||| ||
Sbjct 1927 ATGGCGTACCAAA-GCTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTC 1872
Query 65963 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 66022
||| | |||| |||||||| ||||| | | | | | ||||| || ||
Sbjct 1871 GTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTC 1812
Query 66023 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 66082
| || ||||||| | ||| || |||| | | || |||||||| || ||||||||
Sbjct 1811 GTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGG 1752
Query 66083 AATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142
|||||||| || | || | ||| | || | ||||| || || |||||
Sbjct 1751 GATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACG 1692
Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202
||||| ||||| | | | |||| | ||||| || || | ||| ||||| | | | ||
Sbjct 1691 GAGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACC 1632
Query 66203 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 66262
|| || ||||| || ||||| || | || | ||| ||||| || | || | | |||
Sbjct 1631 GGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCAT 1572
Query 66263 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322
|||| ||||||||| |||||||| ||||| |||| ||| || ||| | ||||||||
Sbjct 1571 AGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAAT 1512
Query 66323 AT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 66380
| | | ||| |||||| || || || ||||| || ||||| | || || ||
Sbjct 1511 ACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTG 1454
Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 66440
| ||||| ||||| ||||| ||||| || ||| |||| | || | || || ||
Sbjct 1453 AGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGAT 1394
Query 66441 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 66500
| |||| | || ||| || ||||| || | || || ||||| ||||| || | ||
Sbjct 1393 AATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTG 1334
Query 66501 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTAC 66559
||| | |||||||| ||||| | || || ||||| || || | || ||
Sbjct 1333 CTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAAC 1275
Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619
| |||||||| | |||||||||||| | || || ||||| || ||||| | |
Sbjct 1274 AGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGAG 1215
Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679
||| ||| |||||||| || || ||||| || | |||| || || || || || |
Sbjct 1214 GTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGAC 1155
Query 66680 AATAACCGAGT 66690
||| | ||||
Sbjct 1154 AATGGCAGAGT 1144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658153046588840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |