Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1076 214 2e-50 >seq1076 Length=4255 Score = 214 bits (236), Expect = 2e-50 Identities = 600/911 (66%), Gaps = 14/911 (2%) Strand=Plus/Minus Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846 || || ||||||||||| || | |||||| || | || | ||| || ||||| Sbjct 2047 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1988 Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906 ||| || |||||||| || || |||||||| | || || ||| |||| | || | | Sbjct 1987 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1928 Query 65907 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TC 65962 || || | ||| | | || ||||||| || | ||| | ||| | ||| || Sbjct 1927 ATGGCGTACCAAA-GCTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTC 1872 Query 65963 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 66022 ||| | |||| |||||||| ||||| | | | | | ||||| || || Sbjct 1871 GTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTC 1812 Query 66023 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 66082 | || ||||||| | ||| || |||| | | || |||||||| || |||||||| Sbjct 1811 GTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGG 1752 Query 66083 AATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 |||||||| || | || | ||| | || | ||||| || || ||||| Sbjct 1751 GATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACG 1692 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 ||||| ||||| | | | |||| | ||||| || || | ||| ||||| | | | || Sbjct 1691 GAGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACC 1632 Query 66203 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 66262 || || ||||| || ||||| || | || | ||| ||||| || | || | | ||| Sbjct 1631 GGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCAT 1572 Query 66263 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322 |||| ||||||||| |||||||| ||||| |||| ||| || ||| | |||||||| Sbjct 1571 AGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAAT 1512 Query 66323 AT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 66380 | | | ||| |||||| || || || ||||| || ||||| | || || || Sbjct 1511 ACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTG 1454 Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 66440 | ||||| ||||| ||||| ||||| || ||| |||| | || | || || || Sbjct 1453 AGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGAT 1394 Query 66441 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 66500 | |||| | || ||| || ||||| || | || || ||||| ||||| || | || Sbjct 1393 AATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTG 1334 Query 66501 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTAC 66559 ||| | |||||||| ||||| | || || ||||| || || | || || Sbjct 1333 CTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAAC 1275 Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619 | |||||||| | |||||||||||| | || || ||||| || ||||| | | Sbjct 1274 AGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGAG 1215 Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679 ||| ||| |||||||| || || ||||| || | |||| || || || || || | Sbjct 1214 GTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGAC 1155 Query 66680 AATAACCGAGT 66690 ||| | |||| Sbjct 1154 AATGGCAGAGT 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658153046588840