Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq994 104 2e-17
seq886 91.5 1e-13
>seq994
Length=39861
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || ||||||| |||| || |||||||| || |||
Sbjct 17450 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 17391
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || || ||||| ||||| || ||||| || ||||| ||| || ||
Sbjct 17390 GCAAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 17331
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||||| | ||||||||||| ||| | |||||| || || | ||
Sbjct 17330 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 17271
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 17270 TTGACGAAAATCTGCAT 17254
>seq886
Length=31666
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| || |||||||| ||||| | |||| ||| || |||||
Sbjct 10714 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGC 10773
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || | |||| |||||||| ||||| || ||||| || ||||| ||| | ||
Sbjct 10774 TTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC-TGAATCTT 10832
Query 139682 TGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
| || | | || | ||||||| | ||| ||||| | ||| | |||||||||||
Sbjct 10833 CGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 10892
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
||| || || ||||| || |||||
Sbjct 10893 CAAGGTCTTGACGAAGATCTGCAT 10916
Score = 89.7 bits (98), Expect = 5e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| ||||| || ||||||||||| || ||| | || | |||||| || ||
Sbjct 10432 TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGC 10491
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| |||||| ||||||| || ||||| || ||||| ||||| || ||||| ||| | ||
Sbjct 10492 TTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTT 10550
Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
| ||| | | || | || |||| | ||| ||||||| ||| | |||||||| ||
Sbjct 10551 CGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGT 10610
Query 139741 CAACGTTTTTACGAATAT 139758
| || || |||| |||
Sbjct 10611 GAGGGTCTTGACGACTAT 10628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496049111879200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |