Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1076 232 1e-55
seq179 113 6e-20
>seq1076
Length=4255
Score = 232 bits (256), Expect = 1e-55
Identities = 609/915 (67%), Gaps = 22/915 (2%)
Strand=Plus/Minus
Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725
|| ||||||||||| ||||| | ||||| || | || | ||| || |||||
Sbjct 2047 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1988
Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785
||| || |||||||| || || ||||| || | || || ||| |||| | || | |
Sbjct 1987 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1928
Query 79786 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TC 79841
|| || | ||| | | || ||||||| || | |||| | ||| | ||| ||
Sbjct 1927 ATGGCGTACCAAA-GCTTCTGAGCCTTGATGGT---CTTGCGACCCTTGCCCTCCTTCTC 1872
Query 79842 GTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899
||| | | ||| | | | |||||||| ||||| | ||| | | ||||| ||
Sbjct 1871 GTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCAC 1814
Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGAT 79957
|||| || ||||||| | ||| || || | || ||| || |||||||| || ||||
Sbjct 1813 TCGTTGGGGCACATCAGTGTCCAGTCACCGT--TCTTTTCAACACGTTTCATGAAAAGAT 1756
Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017
|||| |||||||| || | || ||||| | || | |||||| || || ||||
Sbjct 1755 CAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCT 1696
Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077
| ||||| ||||| | | | |||||| ||||| || || | ||| ||||| | |
Sbjct 1695 TACGGAGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 1636
Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137
| || ||||| ||||| || ||||| || | || | ||| ||||| || | || | |
Sbjct 1635 CACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAA 1576
Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197
||| |||| ||||||||| |||||||| ||||| |||| ||| || ||| | ||||
Sbjct 1575 GCATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCAC 1516
Query 80198 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255
||||| | | ||| |||||| || || || ||||| || ||||| | || ||
Sbjct 1515 GAATACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGT 1458
Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
|| | ||||| ||||| ||||| || || || || |||| | || | || ||
Sbjct 1457 CTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGA 1398
Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375
|| | |||| | || ||| || ||||| || | || || ||||| ||||| || |
Sbjct 1397 TGATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAA 1338
Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTC 80434
|| ||||| |||||||| ||||| | || || ||||| || || | |
Sbjct 1337 CTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TAC 1279
Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494
| || | |||||||| | |||||||||||| | || || ||||| | ||||| |
Sbjct 1278 CAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGA 1219
Query 80495 ACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 80554
| ||| ||| |||||||| || || ||||| || | |||| || || || || |
Sbjct 1218 GGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCAT 1159
Query 80555 AAATAATAACCGAGT 80569
| | ||| | ||||
Sbjct 1158 AGACAATGGCAGAGT 1144
>seq179
Length=39909
Score = 113 bits (124), Expect = 6e-20
Identities = 276/415 (67%), Gaps = 5/415 (1%)
Strand=Plus/Plus
Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033
||| ||||||||||| | | || || |||||||| || || || || ||||| || ||
Sbjct 35465 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 35524
Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093
|||||| || ||||| || || || || || | ||| |||||||| || || || ||
Sbjct 35525 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCTCAACAGC 35584
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCA-CTTTTGAG 50149
||||||||||| || | || || | || | | || || ||||| | || |
Sbjct 35585 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 35643
Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209
|||| || ||||||||| | || || || || || ||||| || |||||||| ||
Sbjct 35644 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATATGTTC 35703
Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269
| || || | || || ||||| | || || | || || |||||||
Sbjct 35704 GCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGT 35763
Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329
| || || ||||| || |||||||| || | |||||||| ||||| || || ||
Sbjct 35764 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 35823
Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384
||||| || | | || || || || || || ||| ||| || || || ||
Sbjct 35824 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGC 35878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718247242957640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |