Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq179 246 4e-60 seq1076 138 2e-27 >seq179 Length=39909 Score = 246 bits (272), Expect = 4e-60 Identities = 567/843 (67%), Gaps = 21/843 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| | ||||| Sbjct 36007 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 35948 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | || |||||| ||||| || | || Sbjct 35947 TCCAAGGATCTTCACGACTGGAACAACCGCCTGACTGCTGATGAGCAGTTCTTCGTCTCT 35888 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | || ||||| || | ||| ||||| ||||||||||| || || || || || Sbjct 35887 CACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAG-CG 35829 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGA 125256 |||| | ||| | || || |||| |||| |||| ||||| ||||| ||||||| Sbjct 35828 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCAGATCATGA 35770 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | ||||| || | ||||| || || |||| ||||| || || | Sbjct 35769 TGGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGCCCG 35710 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | |||| || ||||| ||||| || || || | || | || || || |||||| Sbjct 35709 CCCAGCGAACATAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCT 35651 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || || |||||| | || | | || || | ||| | | || || || Sbjct 35650 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCC 35591 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || || || ||||| |||||||| || || || | ||||| ||||||||| Sbjct 35590 TTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCGCCTTCGCCTCTATCTTCTGGCTCAAG 35531 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||||| || ||||| | |||||| | || ||||| |||||||| Sbjct 35530 AAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGT 35471 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || ||| |||||||||| || || | ||| | | | | || | | || Sbjct 35470 CTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGTCGTGCC 35420 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 || | | | | || | || | || |||||||| | || || || ||||| || Sbjct 35419 AGTAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTC 35360 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735 |||||| | || || | | | |||||||||| | || ||| ||||||| Sbjct 35359 ACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATT 35300 Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCC 125792 ||||| || || |||||||| || || ||||| || ||| | ||||| ||| Sbjct 35299 GAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAAGGTCTACAAGGCC 35243 Query 125793 AAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 | || ||||| || |||||| | ||| || || | || ||||||||||| |||||| Sbjct 35242 ACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAG 35183 Query 125853 AAG 125855 ||| Sbjct 35182 AAG 35180 >seq1076 Length=4255 Score = 138 bits (152), Expect = 2e-27 Identities = 306/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 1611 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 1670 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | || Sbjct 1671 GTCTTCGATTTCCTGGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCGTGCCCGTGAT 1730 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 | || ||| || ||| | || ||| | |||||||| || || || |||||| Sbjct 1731 CTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAACGTGTTGAAAAGAACGGTG-- 1788 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || || |||| |||| || || ||| Sbjct 1789 -ACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAG 1847 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 || ||||| |||| |||||| | |||||| | || |||| | || | || Sbjct 1848 TTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACCA-TCAAGGC 1906 Query 97172 ACGAGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| || ||| | ||||| | ||| ||| ||| ||||| |||| || | ||| Sbjct 1907 TC-AGAAGCTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATG 1964 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | || |||||| || Sbjct 1965 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGC 2024 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||| || ||||| |||||| | |||||| Sbjct 2025 TCCAACCTTTGCACTGAAATTATCGAGTAC 2054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741036958960760