Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq886 116 3e-21 >seq886 Length=31666 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| || ||||||| ||| ||| |||| ||| Sbjct 9975 GTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTG 10034 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | |||||||| || || ||||| || ||||| | ||| || Sbjct 10035 CTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTT 10094 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||| ||| | ||| ||||||| | ||||| |||| |||||||| |||||||| Sbjct 10095 GCTCTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGT 10154 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| ||||||||||| Sbjct 10155 AAGGGTCTTCACGAAGATCTGCAT 10178 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| || ||||| || | ||| ||||| | |||| | ||||| | Sbjct 10709 CAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAA 10768 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| | || || || | |||||| || || || || || || ||||| | || Sbjct 10769 GCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAA 10828 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || | ||||||| | ||| |||||| | || || || | |||||||| || | Sbjct 10829 TCTTCGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGC 10888 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || | || || || |||||||||||| Sbjct 10889 CGGTCAAGGTCTTGACGAAGATCTGCATG 10917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448277745660360