Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1076 199 5e-46 seq179 118 1e-21 >seq1076 Length=4255 Score = 199 bits (220), Expect = 5e-46 Identities = 597/912 (65%), Gaps = 16/912 (2%) Strand=Plus/Minus Query 62943 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63002 || || ||||||||||| || | ||| || || | || | ||| || ||||| Sbjct 2047 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 1988 Query 63003 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63062 ||| || |||||||| || || |||||||| | || || ||| |||| | || | | Sbjct 1987 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1928 Query 63063 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----T 63117 || || | ||| | | || ||||||| || | ||| | |||| | || | Sbjct 1927 ATGGCGTACCAAA-GCTTCTGAGCCTTGATGGTC---TTGCGAC-CCTTGCCCTCCTTCT 1873 Query 63118 CGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATT 63177 |||| | |||| |||||||| ||||| | | | | | ||||| || | Sbjct 1872 CGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACT 1813 Query 63178 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 63237 | | || ||||||| | ||| || |||| | | || |||||||| || ||||||| Sbjct 1812 CGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAG 1753 Query 63238 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63297 | |||||||| || | || ||||| | || | ||||| || || ||||| Sbjct 1752 GGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTAC 1693 Query 63298 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63357 ||||| ||||| | | | |||||| ||||| || || | ||| ||||| | | | | Sbjct 1692 GGAGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCAC 1633 Query 63358 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63417 | || || ||||| || ||||| || | || | ||| ||||| || | || | | || Sbjct 1632 CGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCA 1573 Query 63418 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAA 63477 | |||| |||||| || ||| |||| |||||||||| ||| || ||| | ||||||| Sbjct 1572 TAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAA 1513 Query 63478 TAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63535 || | | ||| |||||| || || || ||||| || ||||| | || || || Sbjct 1512 TACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 1455 Query 63536 TAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63595 | || || ||||| ||||| || || || || |||| | || | || || || Sbjct 1454 GAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGA 1395 Query 63596 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63655 | |||| | || ||| || ||||| || | || || ||||| ||||| || | || Sbjct 1394 TAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTT 1335 Query 63656 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTA 63714 ||| | |||||||| ||||| | || || ||||| || || | || | Sbjct 1334 GCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAA 1276 Query 63715 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63774 | | |||||||| | |||||||||||| | || || ||||| || ||||| | | Sbjct 1275 CAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGA 1216 Query 63775 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63834 ||| ||| |||||||| || || ||||| || | |||| || || || || || | Sbjct 1215 GGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGA 1156 Query 63835 TAATAACCGAGT 63846 ||| | |||| Sbjct 1155 CAATGGCAGAGT 1144 >seq179 Length=39909 Score = 118 bits (130), Expect = 1e-21 Identities = 355/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| ||||||||||| | | || || |||||||| || || || || ||||| || || Sbjct 35465 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 35524 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || ||||| || || || ||||| | ||| |||||||| || || || || Sbjct 35525 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCTCAACAGC 35584 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA-CTTTTGAG 33493 ||||||||||| || | || || | || | | || || ||||| | || | Sbjct 35585 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 35643 Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33553 |||| || ||||||||| | || || || || || ||||| || |||||||| || Sbjct 35644 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATATGTTC 35703 Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 | || || | || || ||||| | || || | || || ||||||| Sbjct 35704 GCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGT 35763 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 35764 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 35823 Query 33674 AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33733 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 35824 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 35883 Query 33734 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33790 || | || | | || || | || | | || ||||| || | | ||| | Sbjct 35884 TGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTGAAGATCCT 35943 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 35944 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 36003 Query 33851 AGAT 33854 | || Sbjct 36004 AAAT 36007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622928503797160