Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq179 131 3e-25 seq1076 107 4e-18 seq253 107 4e-18 seq829 102 2e-16 >seq179 Length=39909 Score = 131 bits (144), Expect = 3e-25 Identities = 397/608 (65%), Gaps = 19/608 (3%) Strand=Plus/Plus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | || ||||| |||| Sbjct 35163 TGGTAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCC 35222 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| ||||| ||||| ||| | |||||| || || | || Sbjct 35223 ATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGA 35282 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 || || || || ||||| | ||||| ||| || |||||||||||||| | | | Sbjct 35283 CGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCA 35342 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 || |||| || || || ||| |||| || ||| || || || | || || Sbjct 35343 CAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCC 35402 Query 251782 T---TCACCTG-----TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC 251833 | ||| ||| || || ||| |||| || | |||| ||||| | Sbjct 35403 TGGATCATCTGCTTACTGGCA-CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGG 35454 Query 251834 CAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAG 251893 |||| | ||| ||||||||||| ||| ||||| ||||||||| | ||| |||| Sbjct 35455 CAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAG 35514 Query 251894 GCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGAC 251953 |||| | ||||| ||| ||||||||||||| | | |||| ||| ||| | | || Sbjct 35515 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATAC 35574 Query 251954 CCTCGACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-AC 252012 |||| ||| | | ||||| || |||| ||||| || ||||| | || | Sbjct 35575 CCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCC 35634 Query 252013 TTCTG--TGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGA 252070 || | ||||| | |||||||||| | ||| || || || || || | |||| Sbjct 35635 ATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGA 35694 Query 252071 GAGAGTTCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCG 252130 || | | |||| ||| |||| |||| | || | ||||| ||||| |||| | Sbjct 35695 GATATGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGG 35754 Query 252131 AATGGATG 252138 | || ||| Sbjct 35755 AGTGAATG 35762 >seq1076 Length=4255 Score = 107 bits (118), Expect = 4e-18 Identities = 452/699 (65%), Gaps = 15/699 (2%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | |||||| | |||||||| ||||||||||| | | || || || | | || Sbjct 2870 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 2812 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 |||||||||| |||||||||| ||||||||||| | | | ||| || |||| Sbjct 2811 AGATCTCCCAGACAGTCTTGTACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCT 2752 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292 | || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 2751 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG- 2693 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | || || || || | | ||||||||| ||||||||||||||||| || Sbjct 2692 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGG 2633 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412 || ||| || || || ||| ||| ||| ||| || ||||||| | Sbjct 2632 CGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGAG 2573 Query 293413 GTAGATGCGGTAGGCATAAGAGC-AGTCGTCAGAGAGTTCCTCACACCCT---TCTTGAC 293468 ||| || ||||||||| |||| || | |||| ||| | | || | ||||||| Sbjct 2572 GTACTGGCAGTAGGCATAGGAGCGAGGAG-CAGACTGTTACGGATGCCGTGTGTCTTGAC 2514 Query 293469 ACGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGA 293526 | | ||| | |||||| |||||| ||| || || | || ||| | | | Sbjct 2513 TTCCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCA 2456 Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 |||| | |||||||| ||| || || |||| ||||||| | ||| || | ||| Sbjct 2455 AACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCC 2396 Query 293587 TCAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACG 293645 | || |||| ||| || || | ||||| || ||| ||| ||||||| Sbjct 2395 TTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAGATGGTCTCAAAGATCTGCTT 2337 Query 293646 GTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTG 293705 |||||||| ||||||| || || || ||||| ||| | ||| |||| Sbjct 2336 GTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAGC 2277 Query 293706 CAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGG 293765 || ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| | Sbjct 2276 AAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTG 2217 Query 293766 AACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 || | || ||||||| ||| || ||| |||||| Sbjct 2216 GACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 2178 >seq253 Length=17842 Score = 107 bits (118), Expect = 4e-18 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 3702 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 3643 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| |||||||||| | || || ||||| ||||||||| || | Sbjct 3642 CAGACCCATCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 3583 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 3582 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 3524 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 3523 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 3478 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| ||||| || ||| ||||| |||| | | || Sbjct 2300 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGACTGTCCTTGCCGCTT 2241 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | ||||| | ||||| || |||||||||||||||||||| || || Sbjct 2240 GCTCT-TGGCAGCGACCTCATCTTATCGTCCTTGACGAGCCTACCAACTATCTCGATCGT 2182 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || || ||||| ||| Sbjct 2181 GACTCTCTCGGCGCCCTG 2164 >seq829 Length=29375 Score = 102 bits (112), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 14461 AGTTGGTTCCCTCTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 14520 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||||||||| |||||||| || || || || || ||||| | || ||||| | || Sbjct 14521 GCGTGCCGACGTCCTACTTCTCGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 14580 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 |||||| | | |||||| | ||||| | || | | |||||||| |||||| Sbjct 14581 CTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 14638 Query 279873 GACTCTGGCTTCCTAGA 279889 ||||| || ||||| || Sbjct 14639 GACTCCGGATTCCTGGA 14655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027805180849241