Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq886 120 7e-22
seq994 113 1e-19
seq586 93.3 1e-13
seq179 91.5 3e-13
>seq886
Length=31666
Score = 120 bits (132), Expect = 7e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || ||||||| ||| || || || || || || || | |
Sbjct 10690 CCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 10749
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || ||||| |||| || || || |||
Sbjct 10750 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGG 10809
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| || ||||| || |||| ||| || || ||
Sbjct 10810 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACC 10869
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| ||||| ||||||| ||||||||||| |||||||| |||
Sbjct 10870 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 10920
Score = 104 bits (114), Expect = 6e-17
Identities = 143/196 (73%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || ||||||| || || || || || || | ||| || || |||||
Sbjct 10215 TTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAA 10274
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCA 288397
||| || ||||||||| || ||| || || || || || ||||| || ||| ||||
Sbjct 10275 GATGAGTCGCTGTTGA---TCCGGGGGAATACCCTCCTTGTCTTGGATCTT-GCTCTTCA 10330
Query 288398 CGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457
| || || || | |||| || || ||||| || || || ||||| || || || ||||
Sbjct 10331 CATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCT 10390
Query 288458 TGACGAATATCTGCAT 288473
||||||| || |||||
Sbjct 10391 TGACGAAGATTTGCAT 10406
>seq994
Length=39861
Score = 113 bits (124), Expect = 1e-19
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || || || || | ||| || || ||||| || ||||||
Sbjct 17480 CCACCGCGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 17421
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || ||||| || ||||| || |||
Sbjct 17420 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 17361
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || ||||| || || | ||| || || ||
Sbjct 17360 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 17301
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || |||||||||||||| || || ||||||||||| ||||||||
Sbjct 17300 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 17254
>seq586
Length=19764
Score = 93.3 bits (102), Expect = 1e-13
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| |||||||||| ||| || || || || || | || || || |||||||||
Sbjct 8617 TTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 8676
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
|| |||||||| ||||| || || || |||||||| || | || || || ||
Sbjct 8677 AGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 8736
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | || || || || || || ||||| ||||| || ||||| ||||| |||||
Sbjct 8737 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 8795
>seq179
Length=39909
Score = 91.5 bits (100), Expect = 3e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212
|||| ||||| | || |||||||| || || || || ||||| ||||||||| || |
Sbjct 35334 TCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTG 35275
Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272
|| || || | ||||| || ||||| | | || ||||||| ||| ||||| |
Sbjct 35274 TCGCTCTTGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACA 35215
Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312
| || || | || ||||| ||||||||||| ||||||||
Sbjct 35214 TCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 35175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179618110512878
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |