Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq994 107 2e-18
seq886 87.8 2e-12
>seq994
Length=39861
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || || || | |
Sbjct 17447 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCA 17388
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || || || ||||| ||| || || |
Sbjct 17387 AAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 17328
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||||||||| | || | ||| || || || || || ||
Sbjct 17327 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 17268
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 17267 ACGAAAATCTGCAT 17254
>seq886
Length=31666
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||||||||||||||||||| | || || ||| || ||||| || || | |
Sbjct 10441 GATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCA 10500
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538
|||| || ||||| ||||| ||||| || || || ||||| ||| | || | |||
Sbjct 10501 AAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTAAC 10559
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||| |||| |||||| ||||| | || | || || ||||| || || |
Sbjct 10560 ATTG-TCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCT 10618
Query 138599 TTAC 138602
| ||
Sbjct 10619 TGAC 10622
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| || |||||||||||||||| || || || || | || ||||| |
Sbjct 9983 TTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAG 10042
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
|||| |||||||| || || || || ||||| || ||||| ||| | || | ||
Sbjct 10043 CGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTC-CTGAATCTTGCTCTTC 10101
Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
| ||| || | ||||| | || || ||||| | || | || || ||||| || ||
Sbjct 10102 ACGTTG-TCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTAAGGGT 10160
Query 138597 TTTTACAAAAATCTGCAT 138614
|| || || ||||||||
Sbjct 10161 CTTCACGAAGATCTGCAT 10178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496247505924720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |