Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq886 138 1e-27
seq994 125 8e-24
seq586 96.9 4e-15
>seq886
Length=31666
Score = 138 bits (152), Expect = 1e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| || || |||||||| |||| || |||||||||||||||||
Sbjct 10725 CTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 10784
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||||||| |||||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 10785 AATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 10843
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| |||| || || |
Sbjct 10844 TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 10903
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 10904 CGAAGATCTGCAT 10916
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| |||||||| || |||||||||| || || || |||| ||
Sbjct 10426 ACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCA 10485
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| || || || |||| |||||||||||| | || | || ||||||||||
Sbjct 10486 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 10545
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||| | | | | || ||| ||| || || || | |||||||| |||
Sbjct 10546 ATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTG 10605
Query 46565 CCCGTCAGCGTTTTAAC 46581
|| || || || || ||
Sbjct 10606 CCAGTGAGGGTCTTGAC 10622
Score = 93.3 bits (102), Expect = 5e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| ||||| || | || || || |||||||| |||||
Sbjct 10216 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAG 10275
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | ||||| || || | || | | ||||||||| |||||| |||| | |
Sbjct 10276 ATGAGTCGCTGTTGATCCGGGGGAATACCCTCCTTGTCTTGGATCTTGCTCTTCACATTA 10335
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || ||| || || || |||| || ||||| || || || || || || ||
Sbjct 10336 TCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACG 10395
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 10396 AAGATTTGCAT 10406
>seq994
Length=39861
Score = 125 bits (138), Expect = 8e-24
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||| || ||||| | || |||||||||||||| || ||
Sbjct 17445 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 17386
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 17385 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 17327
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || ||||| || | ||||| || || ||||| || || || |
Sbjct 17326 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 17267
Query 46581 CAAAGATTTGCATTTTGC 46598
| || || ||||| ||||
Sbjct 17266 CGAAAATCTGCATCTTGC 17249
>seq586
Length=19764
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| || |||||||| ||||| || | || || |||||||| || ||||| |
Sbjct 8615 CCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 8674
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| ||||| ||||| | || | | |||||||||| |||||| ||||| |
Sbjct 8675 TCAGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 8734
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 8735 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 8794
Query 46584 A 46584
|
Sbjct 8795 A 8795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565221435782520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |