Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq179 196 5e-45
seq994 127 2e-24
seq886 113 5e-20
seq586 102 8e-17
>seq179
Length=39909
Score = 196 bits (216), Expect = 5e-45
Identities = 549/830 (66%), Gaps = 27/830 (3%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 35181 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 35240
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | |||||| ||| | |||| | || |||| || || | || || ||||||
Sbjct 35241 GTGGCCTTGTAGACCTTCTCGTTGCCAAG-AG--CGACAAGGAGACGATCAGCGACGAAC 35297
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTC 132800
|| ||||| ||| |||| || | || | || || || |||| || | | |||||
Sbjct 35298 TCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG-GCACAGGGAAGAGCTTC 35356
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGC-GC-- 132857
|||||| || ||||| |||| ||| || || |||| ||| ||| | | ||
Sbjct 35357 GGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCCTGGATCATCTGCTT 35416
Query 132858 -CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916
| || || || ||| | || | | | ||| |||||||| || | |
Sbjct 35417 ACTGGCACGACCCTTG----AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGAC 35472
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
||||||| | || ||||| |||||| ||| |||| || |||||||| || || || |
Sbjct 35473 CCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTCT 35532
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
||||||| || || | |||||| ||| ||||||| ||||| || || || || |
Sbjct 35533 TGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCTCAACAGCAGCAAAGG 35592
Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTC 133094
| || || |||| | | || | || || || |||| ||||| || | ||||| ||
Sbjct 35593 CAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGG--ATCCATCGGATGGCCCAGTC 35650
Query 133095 GGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTC 133154
||||| | | || ||| || || || || |||||||| || | | | ||| ||
Sbjct 35651 AGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGAT--ATGTTCGCTGG 35708
Query 133155 CGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212
|| | | |||||||||||||||| || || | || ||||| | |||||||
Sbjct 35709 GCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCTCC 35768
Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272
|| ||| || |||||||| ||||| || |||||| | ||| || || | |||
Sbjct 35769 ATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCACTGAAT 35828
Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332
|||||||| || || ||||||||||| || || ||| ||||| || || || | |||
Sbjct 35829 CGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGATGTGA 35888
Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGAC 133389
|| ||| |||| | | ||| ||| | ||||||| | ||||||||
Sbjct 35889 GAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTCGTGAAGATCCTTGGAG 35948
Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| || | |||||| | ||||| || || ||||| || || ||||||||
Sbjct 35949 AGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 35998
>seq994
Length=39861
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 17251 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 17310
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| || ||| ||||
Sbjct 17311 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 17369
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| ||||| | || ||||| ||||| || || | |||||||| | ||||||
Sbjct 17370 CCAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 17429
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| | || || || |||| || ||
Sbjct 17430 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCG 17468
>seq886
Length=31666
Score = 113 bits (124), Expect = 5e-20
Identities = 158/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || ||||| || | || |||||| | ||
Sbjct 10406 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 10347
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | || | | |||| || |||| ||||| ||||| |||||| | || |
Sbjct 10346 GATACCATTGATAATG--TGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCCCCGGATC 10289
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| ||||| | ||| ||||| || || || || | || || || ||||||||
Sbjct 10288 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACA 10229
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| |||||| | || || || ||||| || |||
Sbjct 10228 ACATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGT 10191
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || ||||||||| | || ||||| |||
Sbjct 10178 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 10119
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | |||| | |||| || || | ||||| ||||| || ||| | || |
Sbjct 10118 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATC 10061
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | ||| || || ||| |||| || | |||||| | | ||||||||
Sbjct 10060 AGCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACA 10001
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||||| ||||| | || || || | || || || | | |||||||
Sbjct 10000 ACATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCC 9950
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309
||| |||| || || ||||| ||||| ||||||||| | || || ||| | |||| | |
Sbjct 10628 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACC 10569
Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | | |||| || || | ||||| ||||| || || | ||||| |||||
Sbjct 10568 ATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGC 10509
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| || | || || || || || || |||| || ||||| |||||||||||| |||
Sbjct 10508 CTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAA 10449
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| | || || ||| | || || ||
Sbjct 10448 AAGGAATCTACTCTTCATCTCGTCCTCCG 10420
>seq586
Length=19764
Score = 102 bits (112), Expect = 8e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| | || |||||| || | |||| | |
Sbjct 8795 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 8736
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||||||||| ||
Sbjct 8735 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAACAGCGACTG 8676
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || || | || || ||| |||||| |||||||| |||
Sbjct 8675 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAG 8616
Query 38433 G 38433
|
Sbjct 8615 G 8615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500157788563840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |