Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1076 250 3e-61 seq787 104 3e-17 seq599 89.7 6e-13 >seq1076 Length=4255 Score = 250 bits (276), Expect = 3e-61 Identities = 1086/1693 (64%), Gaps = 61/1693 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 ||||| || ||||| || || ||||| ||| |||||| || | || | ||||| | Sbjct 2971 CGAAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGT 2913 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||||| ||||| |||||||| ||||| Sbjct 2912 GATCTTGCCCATCGTGGGGTCCTTCATGTGAATGTTCAGTGACTGGGACTGATCAATGAA 2853 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAG 109582 ||| |||||||| ||||| | | || | | ||| | | |||||||||| Sbjct 2852 GGCACCTCGATCAGCAGCCATCTGAACGA----CCTGGCGCTGAGAGATCTCCCAGACAG 2797 Query 109583 TCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC--- 109639 ||||||||| | ||||| ||| | || |||| ||||| ||||| || ||| Sbjct 2796 TCTTGTACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCT 2737 Query 109640 CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699 |||| | | || | | |||||| | | ||||| ||||| | | | || | || Sbjct 2736 CAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGTCGACAAGGT 2683 Query 109700 CAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 | || || | ||||| || || |||||||| || || || |||||| Sbjct 2682 CCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGA 2623 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 | || | |||||||| ||||| ||||| |||||||| | || || | || || | Sbjct 2622 TATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGAGGTACTGGCAG 2563 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876 | ||||| ||||| | ||| |||||||| |||| || | ||||| || ||| || | Sbjct 2562 TAGGCATAGGAGCGAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAA 2503 Query 109877 TTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936 | ||||| || | | || | || | | |||||| || || | Sbjct 2502 GAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGTCAAACTGGA 2449 Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCA 109996 | | |||||||| || || ||||||||||| | ||| | ||||| ||| |||| Sbjct 2448 GGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCA 2389 Query 109997 ACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 || | | | || | | || || || ||||| || |||||||| || || || || Sbjct 2388 GCT-GCACGGAGGCAGTGAGGGCAGCGTGATAGATGGTCTCAAAGATCTGC---TTGTTG 2333 Query 110056 AGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAG 110111 || |||| ||| | |||||||| | || || || || || |||| || || Sbjct 2332 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCAAGGAAAGCATCAGCAAG 2274 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||||||||| ||||||||||| || || ||||||| | ||||| | || Sbjct 2273 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGAC 2214 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||| ||| ||||||| | || || || | ||| || ||| | Sbjct 2213 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 2154 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGAGCAA 110290 ||| | || | | | ||| | | | || | || |||| | ||| |||| | Sbjct 2153 ATGCAACTTCTTGAAGTCGTA-GCAAGCTTCATCGTAGTTGATGAAGGAGGGCAGAGACA 2095 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 ||| ||||| ||||| |||| |||||| | | ||| || | |||||| || | Sbjct 2094 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGC 2035 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 | | |||||| || ||| ||| | |||||| || || ||| |||||| |||| Sbjct 2034 AAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCAT 1975 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| ||||||||| ||||| | || || || ||||| | || |||||||| | ||| | Sbjct 1974 CCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA 1915 Query 110471 -CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527 | || | | | | | || |||| | | || |||| ||||||||| ||||| Sbjct 1914 GCTTCTGAGCCTTG-ATGGTCTTGCG--ACCCTTGCCCTCCTTCTCGTACTTTTCGTACA 1858 Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 |||| || |||| |||||| || | || || || || ||| || | | Sbjct 1857 GAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCA 1798 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | | ||| | || || ||||| | |||||||| || ||||| ||||| | || Sbjct 1797 GTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGGATCCAAAGGGCAA 1738 Query 110648 AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGT 110707 |||||| |||||| ||| |||| || | ||| ||||| || || |||| || | Sbjct 1737 GGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCCAGGAAAT 1678 Query 110708 CCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT------GGATCCCTTACGAC 110761 | | || ||| |||||||| || ||||| |||| || | || || ||| | Sbjct 1677 CGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGC 1618 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 |||| |||| ||||| || || ||| |||||||| | |||||||||| ||| | Sbjct 1617 CACCC---TGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAATAC 1561 Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881 ||| ||| ||| || ||||| || || | | |||||||| ||| | || Sbjct 1560 CATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACAT 1501 Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAA 110940 | |||||||||||| ||| ||| || ||||| ||| |||| ||| | || Sbjct 1500 TTAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGAGTATCGTAG 1442 Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA 111000 || || ||||| || |||| | ||| | |||||||| || | || || || Sbjct 1441 ATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTGGGGCTGA 1382 Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCT 111058 || || || ||||||||||| || || | ||||| ||| ||| |||| |||||| Sbjct 1381 GGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGA--AGAACTTGCTAGACATCA 1324 Query 111059 TGTTGTATGTGTC 111071 |||||||| || Sbjct 1323 GATTGTATGTCTC 1311 >seq787 Length=47531 Score = 104 bits (114), Expect = 3e-17 Identities = 278/416 (67%), Gaps = 18/416 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| || | | || | || || ||||| | || || || || Sbjct 1065 CGGTCAAATCGCCCTGGTCGCATCAAGGCCTTGTCGAGCATATCCGCTCGATTGGTGCCG 1124 Query 11563 GCAATGACTACAATGCCAG-TCTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 |||| || |||| || | || | | | | ||||||||||||||| ||||||| ||||| Sbjct 1125 GCAAGAACAACAA--CCTGCTCACGAGTATTGAAACCGTCCATTTCAGTGAGAATCTGGT 1182 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 | | || ||| |||||||||||| | | || || | |||| | | | | | Sbjct 1183 TCAGAGTTGCTTCCCGCTCATCGTTGCCACCGAATCCC--CGGCCGCTCTCCTGTCGCGC 1240 Query 11680 ACA-------GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 || ||||||||||| || ||||| | ||| || || ||| |||| | | Sbjct 1241 ACGTCCAATTGCGTCAATCTCGTCAATGAAGATGATGCAAGGGGCGTTCTTACGTCCTTC 1300 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG- 11791 |||| | || | |||||| | ||| ||||| || ||||| |||||||| | | Sbjct 1301 GGCGAACAAATCTCTCACACGCGAAGGTCCGACACCGACAAACATTTCAACGAACTCAGA 1360 Query 11792 -CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | || | ||||||| ||| || || |||||| || || |||| || || | Sbjct 1361 ACCGCTCA-CACTGAA-GAATGGTACTCCAGACTCGCCGGCTGTGGCCTTGGCAAGCAAT 1418 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||||||| |||||||| | ||||| | || || || || |||||||||||||| Sbjct 1419 GTCTTACCAGTACCAGGAGGGCCAGCTAAAATAGCACCTCGAGGGATCTTGGCACC 1474 >seq599 Length=95380 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539 |||| || | || ||||| || ||| ||||| ||||| | || || || || | Sbjct 24121 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCTAAGCATTTCATTGACACAGGCGCTG 24180 Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599 | ||||||||| | ||||| ||| ||||||| ||| | |||||||| ||| || Sbjct 24181 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 24240 Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651 ||||||||||| ||| | || || ||||| || || ||||||||||| || Sbjct 24241 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCG 24292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588958323357800