Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq886 93.3 3e-14 seq586 84.2 1e-11 >seq886 Length=31666 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || || | || | || || ||||| || ||||| || Sbjct 10726 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 10785 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||||||||||| ||||||| |||||| Sbjct 10786 ATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 10845 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| |||| ||| ||||| || || || | ||||| || Sbjct 10846 TCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACG 10905 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 10906 AAGATCTGCAT 10916 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | |||| | || |||| |||| ||| || || || || Sbjct 9988 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAACTGCTTACCAGCGAA 10046 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||||||||| |||||| || ||| Sbjct 10047 GATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 10106 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || || || || | ||| ||||| ||||| || || |||||||| Sbjct 10107 GTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTAAGGGTCTTCAC 10166 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 10167 GAAGATCTGCATA 10179 Score = 86.0 bits (94), Expect = 4e-12 Identities = 131/185 (71%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||| ||||| | |||| |||| | || || || || ||||| ||||| Sbjct 10443 TTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 10502 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906 || || || |||||||| | || | ||||||||||| ||||||| || || Sbjct 10503 GATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATT 10562 Query 34907 --GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 |||| ||||| || | |||||| || | ||| ||||| || || ||||| ||| Sbjct 10563 GTCGATGGTATCG---GAC--GACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 10617 Query 34965 TTCAC 34969 || || Sbjct 10618 TTGAC 10622 >seq586 Length=19764 Score = 84.2 bits (92), Expect = 1e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||||||||| || || |||| |||| || ||||| || || || || || Sbjct 8617 TTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 8676 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| || ||||| | || | |||||||||||| ||||| ||||| | Sbjct 8677 AGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 8736 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 || | || || ||| || || | ||| ||||| || ||||| || |||||||| || Sbjct 8737 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 8795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624100510728