Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq886 93.3 3e-14
seq586 84.2 1e-11
>seq886
Length=31666
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| || || || || | || | || || ||||| || ||||| ||
Sbjct 10726 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 10785
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||||||||| | || | ||||||||||| ||||||| ||||||
Sbjct 10786 ATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 10845
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| |||| ||| ||||| || || || | ||||| ||
Sbjct 10846 TCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACG 10905
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 10906 AAGATCTGCAT 10916
Score = 89.7 bits (98), Expect = 3e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
|| ||||| ||||| ||||| | |||| | || |||| |||| ||| || || || ||
Sbjct 9988 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAACTGCTTACCAGCGAA 10046
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || || ||||| || | || | ||||||||||| |||||| || |||
Sbjct 10047 GATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 10106
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | |||| || || || || | ||| ||||| ||||| || || ||||||||
Sbjct 10107 GTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTAAGGGTCTTCAC 10166
Query 34970 AAAGATCTGCATA 34982
||||||||||||
Sbjct 10167 GAAGATCTGCATA 10179
Score = 86.0 bits (94), Expect = 4e-12
Identities = 131/185 (71%), Gaps = 10/185 (5%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| || |||||||| ||||| | |||| |||| | || || || || ||||| |||||
Sbjct 10443 TTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAA 10502
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906
|| || || |||||||| | || | ||||||||||| ||||||| || ||
Sbjct 10503 GATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATT 10562
Query 34907 --GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
|||| ||||| || | |||||| || | ||| ||||| || || ||||| |||
Sbjct 10563 GTCGATGGTATCG---GAC--GACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 10617
Query 34965 TTCAC 34969
|| ||
Sbjct 10618 TTGAC 10622
>seq586
Length=19764
Score = 84.2 bits (92), Expect = 1e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||||||||| || || |||| |||| || ||||| || || || || ||
Sbjct 8617 TTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 8676
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
||||| || ||||| | || | |||||||||||| ||||| ||||| |
Sbjct 8677 AGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 8736
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|| | || || ||| || || | ||| ||||| || ||||| || |||||||| ||
Sbjct 8737 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 8795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324624100510728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |