Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1076 111 2e-19 seq179 93.3 5e-14 >seq1076 Length=4255 Score = 111 bits (122), Expect = 2e-19 Identities = 418/651 (64%), Gaps = 6/651 (1%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| || || || || ||||||| || ||| || | | |||| || | |||| Sbjct 1822 CCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATG 1763 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || |||||||| || | || | ||| | | | | || || || || Sbjct 1762 AAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCG 1703 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 ||| | || || || || || | | ||||| ||||| || || | || || Sbjct 1702 TGGTTCTTACGGAGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATG 1643 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| ||||| || || || || || || | ||| | ||||| ||||| | Sbjct 1642 GCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAG 1583 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | | ||| || ||||||||||| ||| |||| ||||| || | || || ||| Sbjct 1582 ACACGAAGCATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCA 1523 Query 48456 CTAGCTCTTATA--TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 |||| | ||| | | ||| | ||| |||||||| ||||| || || || | | Sbjct 1522 GTAGCACGAATACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGG 1465 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 |||| || || ||||| || ||||| || ||||| || || |||||| | | | Sbjct 1464 CACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA 1405 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | ||| || | ||| || ||| ||| || | ||| || | || || || ||||| Sbjct 1404 AGCAAGATGATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCG 1345 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGA 48692 | || | || || | || || ||||| || | || || ||||| || Sbjct 1344 TGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCC 1285 Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTT 48752 | ||||| | ||| |||||||| | ||| | ||||| | || ||||| || | Sbjct 1284 AG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCA 1226 Query 48753 ATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 ||||| | || |||||| ||||| || || || ||||| || | |||| Sbjct 1225 ATTTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTAT 1175 >seq179 Length=39909 Score = 93.3 bits (102), Expect = 5e-14 Identities = 361/562 (64%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||| || || |||||||| | | || | || || || || || | | Sbjct 35451 CAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 35510 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| || || | || || | |||||| ||||| || || | ||| ||||| Sbjct 35511 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAG 35570 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA-TCATTATTATG 19139 ||||| || || || ||||| ||||| || | | || || || | || |||| || Sbjct 35571 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCA-AAGGAGGAGTCCTTATCCTG 35629 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | ||||| |||||||||||| | || || || ||||| || | || Sbjct 35630 GATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 35689 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || ||||| | |||| | | || || | || | || || | | ||| | Sbjct 35690 GAAGAGATATGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGT 35749 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || || ||||| || || || ||||| || ||||| || || | || || | || Sbjct 35750 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGAT 35809 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| || || | || |||| ||||| | || || || || || |||||| || || Sbjct 35810 CTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 35869 Query 19380 AAAAAATGCTAATACATGTTTAATA-----AAATGTTTTTCATC--TGAGGTTAATGTAT 19432 || || || | |||| | | || || | ||| | | ||| || | Sbjct 35870 GAAGAAAGC--AAGGATGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTG--T 35925 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 |||| || | || ||| || || | ||| | || ||| | ||||| || |||||||| | Sbjct 35926 TCCAGTCGTGAAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 35985 Query 19493 CTTTTTTATACATGTTCCATAT 19514 | || || ||||| | ||| || Sbjct 35986 CCTTCTTGTACATTTGCCAAAT 36007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091929709640