Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1076 111 2e-19
seq179 93.3 5e-14
>seq1076
Length=4255
Score = 111 bits (122), Expect = 2e-19
Identities = 418/651 (64%), Gaps = 6/651 (1%)
Strand=Plus/Minus
Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215
||||| || || || || ||||||| || ||| || | | |||| || | ||||
Sbjct 1822 CCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATG 1763
Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275
|| | ||| || |||||||| || | || | ||| | | | | || || || ||
Sbjct 1762 AAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCG 1703
Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335
||| | || || || || || | | ||||| ||||| || || | || ||
Sbjct 1702 TGGTTCTTACGGAGATCCAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATG 1643
Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395
|| | |||| ||||| || || || || || || | ||| | ||||| ||||| |
Sbjct 1642 GCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAG 1583
Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455
|| | | ||| || ||||||||||| ||| |||| ||||| || | || || |||
Sbjct 1582 ACACGAAGCATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCA 1523
Query 48456 CTAGCTCTTATA--TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513
|||| | ||| | | ||| | ||| |||||||| ||||| || || || | |
Sbjct 1522 GTAGCACGAATACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGG 1465
Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573
|||| || || ||||| || ||||| || ||||| || || |||||| | | |
Sbjct 1464 CACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA 1405
Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633
| ||| || | ||| || ||| ||| || | ||| || | || || || |||||
Sbjct 1404 AGCAAGATGATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCG 1345
Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGA 48692
| || | || || | || || ||||| || | || || ||||| ||
Sbjct 1344 TGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCC 1285
Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTT 48752
| ||||| | ||| |||||||| | ||| | ||||| | || ||||| || |
Sbjct 1284 AG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCA 1226
Query 48753 ATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803
||||| | || |||||| ||||| || || || ||||| || | ||||
Sbjct 1225 ATTTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTAT 1175
>seq179
Length=39909
Score = 93.3 bits (102), Expect = 5e-14
Identities = 361/562 (64%), Gaps = 13/562 (2%)
Strand=Plus/Plus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||| ||| || || |||||||| | | || | || || || || || | |
Sbjct 35451 CAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 35510
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080
|||||||| || || | || || | |||||| ||||| || || | ||| |||||
Sbjct 35511 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAG 35570
Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA-TCATTATTATG 19139
||||| || || || ||||| ||||| || | | || || || | || |||| ||
Sbjct 35571 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCA-AAGGAGGAGTCCTTATCCTG 35629
Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199
|||||| | ||||| |||||||||||| | || || || ||||| || | ||
Sbjct 35630 GATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 35689
Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259
|| ||||| | |||| | | || || | || | || || | | ||| |
Sbjct 35690 GAAGAGATATGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGT 35749
Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319
|| || ||||| || || || ||||| || ||||| || || | || || | ||
Sbjct 35750 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGAT 35809
Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379
||| || || | || |||| ||||| | || || || || || |||||| || ||
Sbjct 35810 CTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 35869
Query 19380 AAAAAATGCTAATACATGTTTAATA-----AAATGTTTTTCATC--TGAGGTTAATGTAT 19432
|| || || | |||| | | || || | ||| | | ||| || |
Sbjct 35870 GAAGAAAGC--AAGGATGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTG--T 35925
Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492
|||| || | || ||| || || | ||| | || ||| | ||||| || |||||||| |
Sbjct 35926 TCCAGTCGTGAAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 35985
Query 19493 CTTTTTTATACATGTTCCATAT 19514
| || || ||||| | ||| ||
Sbjct 35986 CCTTCTTGTACATTTGCCAAAT 36007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562091929709640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |