Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq886 116 2e-20 seq458 93.3 3e-13 >seq886 Length=31666 Score = 116 bits (128), Expect = 2e-20 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || || || || || || || || Sbjct 10413 ACGGAGGCGGAGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGT 10472 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||||||||||||||||||||| || || || || || |||||||| || || Sbjct 10473 TCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCC 10532 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| || ||| || || ||||| | | | || |||| Sbjct 10533 CTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAA-CCTCAA 10591 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 |||| || || || || ||||| ||||| |||| Sbjct 10592 GGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 10624 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || | || || || | ||||| Sbjct 10185 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 10244 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||||||||| ||||| || || || || |||||||| || ||||| || Sbjct 10245 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGGGGAATACC 10304 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| || ||| ||||| ||||| | || | | ||| | Sbjct 10305 CTCCTTGTCTTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 10363 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || ||||| ||||| ||||| Sbjct 10364 GAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTG 10403 >seq458 Length=40226 Score = 93.3 bits (102), Expect = 3e-13 Identities = 441/688 (64%), Gaps = 27/688 (4%) Strand=Plus/Plus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 ||||||| ||||||||||||||||||| |||||| | ||||| ||| || |||| || Sbjct 20744 GACGTCTCCGAACTGCTTGTGAACGTGCCAAGCGAACACTTTCCTCTTCTGCTCAGACCT 20803 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCT 475603 || | || | || ||||| || || || ||||| || || ||| ||| || | ||| Sbjct 20804 CTATCGAGATCGACTCTCTCTTCGAGGGTATTGACTTCTACACCTC-TATCACCCGTGCT 20862 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 || || || | || |||||||| || || || | ||||| || | || Sbjct 20863 CGTTTCGAGGAGCTCTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGACCGTGTC 20922 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 |||| || | || | ||||| || | ||||| || ||||| || || || || || Sbjct 20923 CTCACCGACGCCAAGATCGACAAGTCTCTTGTCCACGAGATTGTCCTCGTCGGTGGCTCT 20982 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGT 475778 || | ||||| | |||| || |||| | || || || || || || Sbjct 20983 ACCCGTATTCCCCGTGT-CCAGAA--GC--TCATTACCGACTACTTCAACGGAAAGGAGC 21037 Query 475779 TAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGC 475836 || |||| | || |||||||| |||||||| || || || || ||||| || || Sbjct 21038 CCAA--CAAGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGC 21095 Query 475837 TATTTTATCAGGTCAATCAGACGAGAAA--CTA--AATAATATTGTACTTGTTGACGTAA 475892 ||| | || ||| || | || || | | || | || | ||| | || || Sbjct 21096 GATTCTCTCCGGT-GATACCTCCAGCAAGGCCACCAACGAGATCCTGCTTCTCGATGTCG 21154 Query 475893 CTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAA 475952 | || || || | ||| | || || | ||| || || ||||| || ||||| | | | Sbjct 21155 CCCCCCTCTCTCTCGGTATCGAGACCGCTGGTGGTATGATGACCAAGCTTATCCCCCGCA 21214 Query 475953 ATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAA 476012 | || | ||||| || || || | || || ||||| | || || || || | Sbjct 21215 ACACCACCATCCCCACAAAGAAGTCTGAGGTCTTCTCCACCTTCTCCGACAACCAGCCTG 21274 Query 476013 CTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT- 476071 ||| ||||| ||| || ||||| | || |||||| | | ||||| ||| Sbjct 21275 GTGTTCTTATCCAGGTCTACGAGGGTGAGCGTCAACGCACTAAGG---ACAACAATCTTA 21331 Query 476072 --GGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129 || | || | || ||||| || |||||||| | || ||||| || ||||| | Sbjct 21332 TGGGCAAGTTCGAGCTCACTGGTATCCCCCCTGCTCCTCGTGGTGTTCCCCAGATTGAGG 21391 Query 476130 TTACTTTTGATATTGATGCAAATGGTAT 476157 | || || ||| ||||||| || ||||| Sbjct 21392 TCACCTTCGATCTTGATGCCAACGGTAT 21419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268076209460348