Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq179 159 5e-33
seq1076 118 2e-20
seq1342 114 2e-19
seq306 104 4e-16
>seq179
Length=39909
Score = 159 bits (176), Expect = 5e-33
Identities = 234/328 (71%), Gaps = 5/328 (2%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | |||||| ||| || || |||||||| || |||||
Sbjct 35471 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTT 35530
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||| | ||| ||| ||| ||||| ||||| || || |||||
Sbjct 35531 CTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCTCAACAGCAGCAAA 35590
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| | ||||| |||| |||||| | | | ||| | | |||||| || |||||
Sbjct 35591 GGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCCCA 35647
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCT 794578
|| ||||| || | | |||| | || || |||||| ||||| | || | ||
Sbjct 35648 GTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATATGTTCG-CT 35706
Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638
| | || ||||||| |||||||||||||||||| ||||||||||| ||||| ||||| |
Sbjct 35707 GGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCT 35766
Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666
| || |||||||||||| || |||||
Sbjct 35767 CCATCATGATCTGGAAGCCGTAGAAGCA 35794
Score = 120 bits (132), Expect = 5e-21
Identities = 169/234 (72%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|| ||| |||||| |||||||||||||| | || ||||| |||||| | |||
Sbjct 35175 ACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAG 35234
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGA 794034
||||||| | | |||| ||||||| || |||||| |||| || || || ||||
Sbjct 35235 GGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGA--CAAGGAGACGATCAGCGA 35292
Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094
|||| ||||||||||| ||||||| | | ||||||||||| ||| || ||| || |
Sbjct 35293 CGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGAG 35352
Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148
||| ||| ||||| | ||| || |||||| || ||||||| | |||||
Sbjct 35353 CTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT-CCTGG 35405
>seq1076
Length=4255
Score = 118 bits (130), Expect = 2e-20
Identities = 181/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||||||||| || || |||| ||| ||||| || ||||| || |||| || || ||
Sbjct 1613 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAATACCATTCGA 1554
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||| || || | ||| | ||| | || || | |||| | | ||
Sbjct 1553 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 1494
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| || || ||| ||||||||| | || || | || || || |||||||| |||||
Sbjct 1493 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1434
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| |||| ||||||| || | || ||||| || || ||| || | | |||||
Sbjct 1433 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTGGGGCTGAGGAGTGCC 1374
Query 2073780 GGCATTGAAGAGCGTggg 2073797
||||||||||||||||||
Sbjct 1373 GGCATTGAAGAGCGTGGG 1356
>seq1342
Length=9437
Score = 114 bits (126), Expect = 2e-19
Identities = 87/103 (84%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||||||||||||||| || || || | || ||||| ||||| |||||| | |
Sbjct 3601 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTTGGCTGCAAAACCGTCGCCAACATGA 3660
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||||||| |||||||| |||||||| || || |||||
Sbjct 3661 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTCAACAT 3703
>seq306
Length=58586
Score = 104 bits (114), Expect = 4e-16
Identities = 78/92 (85%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||||||||| |||||||||||| |||| || || ||| |||
Sbjct 7670 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGCAG 7611
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| || || || | ||||||||||| ||||
Sbjct 7610 GATGAGACGGACAGAAGTCTGGATCTCTCGGG 7579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915990994679039
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |