Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq886 105 2e-17 >seq886 Length=31666 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| | || || ||| |||||| |||| Sbjct 10163 AAGACCCTTACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGTGACACTATCGACAAC 10104 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || || || || || | ||||||||| Sbjct 10103 GTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAGCAGCGTCTTATCTTC 10044 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | || ||| ||| |||||| ||||||| ||||| Sbjct 10043 GCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAACATCCAGAAGGAGTCA 9984 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||| | ||||||| Sbjct 9983 ACTCTTCACCTCGTTCTCCGACTTCG 9958 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| | ||| ||||||||||| ||||| ||||||| || ||||| ||| || Sbjct 9958 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 10017 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||| |||||| || ||||||||||| || || ||| Sbjct 10018 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGA 10062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181784443868321