Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq179 192 8e-43 seq1076 105 1e-16 >seq179 Length=39909 Score = 192 bits (212), Expect = 8e-43 Identities = 356/510 (70%), Gaps = 18/510 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || | Sbjct 36008 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 35950 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| | || |||| ||| Sbjct 35949 TCTCCAAGGATCTTCACG----ACTGGAACAACCGCCTGACTGCTGATGAGCAGTTCTTC 35894 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||| || ||| ||||| ||| ||||| ||||| ||||||||| | Sbjct 35893 GTCTCTCACATCCTTGC-TTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGT 35835 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 35834 CGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGAT 35775 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||| ||||| || |||||||| ||||| |||||||||||| ||||||| Sbjct 35774 CATGATGGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 35715 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || | | || | || | ||||| |||||| || || | || | | | || | Sbjct 35714 GCCCGCCCAG-CGAACATATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGA 35656 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||| |||||||| || |||||| | | | || ||| | ||||||| |||| || Sbjct 35655 AGGCTGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCT 35598 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 ||| | |||||| || || ||||| ||||| ||| ||| ||| | | ||||| || Sbjct 35597 CGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCGCCTTCGCCTCTATCTTCTG 35538 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||| || |||||||| ||||| Sbjct 35537 GCTCAAGAAGCGTGGTCTCATGCCTGGTCT 35508 >seq1076 Length=4255 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| ||||||||||| || | || || || || ||||| || | || Sbjct 1356 CCCACGCTCTTCAATGCCGGCACTCCTCAGCCCCAATTATCATCTTGCTTCTTGGTTGAT 1415 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 1416 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 1475 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | | ||| | || || | ||| | ||| | Sbjct 1476 AAGATGGCTGGTGGTATTGGTCTAAATGTGCACCGTATTCGTGCTACTGGCTCATACATC 1535 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || || || |||| || |||||||| || || ||| |||| Sbjct 1536 GCCGGTACCAACGGTACATCGAATGGTATTGTTCCTATGCTTCGTGTCTTCAACAACACT 1595 Query 260165 GCGCGCTACGTCGACCAG 260182 || || || ||||||||| Sbjct 1596 GCTCGGTATGTCGACCAG 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177579619136962