Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016- 06-02] 2,401 sequences; 41,308,709 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1076 172 8e-38 seq179 95.1 2e-14 >seq1076 Length=4255 Score = 172 bits (190), Expect = 8e-38 Identities = 554/851 (65%), Gaps = 14/851 (2%) Strand=Plus/Minus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || || || | || || ||||| ||| ||||| |||||||| || || || Sbjct 2018 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1959 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | || || ||| |||| | || | ||| | | ||||| | ||| || || Sbjct 1958 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGAT 1899 Query 69471 TACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATATAGCCGTTCGAATTCA 69525 ||||||| || ||| ||| || || || | | ||| | |||| ||||| || Sbjct 1898 ---GGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACTCC 1844 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 ||||| | || | | ||||| || || || || ||||||| || ||| || | Sbjct 1843 TCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCG 1784 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTG 69645 | | | ||| |||||||| || ||||| || |||||||| || | || ||||| | | Sbjct 1783 TTCTTTTCAACACGTTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGG 1724 Query 69646 GTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAA 69705 | | || || || || || || ||||| || || || | | |||||| Sbjct 1723 GCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCCAGGAAATCGAAGACATCAGAG 1664 Query 69706 TGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATG 69765 ||||| || || || || || || | | || ||||| || || || ||||| || | Sbjct 1663 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 1604 Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 || | |||||||| || |||| | ||||| |||| ||||||||| ||| |||| || Sbjct 1603 TACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAATACCATTCGATGTACCGTTG 1544 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 || || | || || || | || |||||| | | |||||| || || || Sbjct 1543 GTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCA 1484 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 ||||| || ||||| | ||||| || | || || || || ||||| || || || Sbjct 1483 GCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCG 1424 Query 69946 TCTATCATGTTAAG-AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAA 70004 || |||| | || ||||| || | || | ||| | || ||| || ||||| || Sbjct 1423 TCCTTCATATCAACCAAGAAGCAAGAT-GATAATTGGGGCTGAGGAGTGCCGGCATTGAA 1365 Query 70005 TAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGC 70064 | || || || || || ||||| | || ||| | |||||||||||| || | | Sbjct 1364 GAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 1305 Query 70065 TGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | || ||||| ||| | || || | | |||||||| | ||| |||||||| | Sbjct 1304 TCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGC 1246 Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183 | || || | ||| | ||||| | ||||||||| |||| ||| || || |||| Sbjct 1245 GCTCGACAATCTTACCGTCAATTTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 1186 Query 70184 AATAGTTGTAT 70194 | || | |||| Sbjct 1185 AGTATTGGTAT 1175 >seq179 Length=39909 Score = 95.1 bits (104), Expect = 2e-14 Identities = 361/560 (64%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| |||||| || || ||||| || | | || | ||||| || || || || Sbjct 35450 GCAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 35509 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| ||||||||||| |||||||| || || | || || | ||| ||||| Sbjct 35510 ACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAA 35569 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA---TG 39792 ||| || || || || ||||| ||||| || | || | | | || ||| || Sbjct 35570 GATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTG 35629 Query 39793 TATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | || ||||| ||||| ||||| | || || || || || || || | Sbjct 35630 GATCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGT 35688 Query 39852 TAAAGAGATAATGTT-TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||||| ||||| | | || || | || || || || | || || Sbjct 35689 TGAAGAGAT-ATGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAG 35747 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || || ||||| || ||| ||||| || ||||| || || | || || | Sbjct 35748 GTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGG 35807 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 || || ||||| || |||| || | | || || || || || |||||| || Sbjct 35808 ATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCA 35867 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTC 40087 || || || || | | || | || | | ||||| | |||| || ||| Sbjct 35868 GCGAAGAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTC 35927 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 ||||| | | ||| || || | ||| | || ||||| ||||| || || ||||| ||| Sbjct 35928 CAGTCGTGAAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCC 35987 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 35988 TTCTTGTACATTTGCCAAAT 36007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686888184149640