Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2031653_20[genbank_20GCA_5F001654555.1_202016-
06-02] 2,401 sequences; 41,308,709 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1076 306 4e-78
seq886 185 1e-41
seq994 165 9e-36
seq586 129 7e-25
seq179 127 2e-24
>seq1076
Length=4255
Score = 306 bits (338), Expect = 4e-78
Identities = 1148/1767 (65%), Gaps = 69/1767 (4%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||||||||| ||||||||| | ||||
Sbjct 2980 GCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAGCCTGCAAAGTGC 2921
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
||| ||| ||| | | ||||||| || |||| |||||||| ||||| ||||||
Sbjct 2920 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGAATGTTCAGTGACTGGGACTGA 2861
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210
||||| || || ||||| || ||||| | || | || | | | | || |||||
Sbjct 2860 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCGCT-GAGAGATCTCCCA 2802
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| | || | || |||| || | | | | ||
Sbjct 2801 GACAGTCTTGTACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 2745
Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||| | || |||| | || |||| || | ||| | ||| | | | ||
Sbjct 2744 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 2685
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
|| || | || | | ||| || | || |||| || ||||| || || |
Sbjct 2684 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGGCGTTG 2628
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | || | ||||| ||||| || ||||||||| || | ||||| | || ||
Sbjct 2627 GTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGAGGTACT 2568
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| || ||| | ||| || || | |||||| |||||| |||||
Sbjct 2567 GGCAGTAGGCATAGGAGCGAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 2508
Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553
|| | | || | ||| | ||| | ||| |||| ||||||||| |
Sbjct 2507 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCAAAC 2453
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||| ||||| || || || || ||| ||| || ||| || |||||| |||
Sbjct 2452 TGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTA 2393
Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672
||||||| |||| || | ||||| |||||||| ||| |||||||| ||||||
Sbjct 2392 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGATAGATGGTCTCAAAGATCTGCTTGTT 2334
Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732
| | || |||| || ||||| | || | || | ||| | ||||| ||
Sbjct 2333 GAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAGCAAG 2274
Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791
||||||||| || | | || || ||||||||| |||| | | || | ||||| | |
Sbjct 2273 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 2215
Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851
||||| ||| |||||||| |||||||||||| |||||||| | | || |
Sbjct 2214 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCT 2155
Query 80852 CATGAAGTTTCTGAAAGTCGAATT--GGTTCCCCTTCACAAATGCCGGAAGGCT----CA 80905
||| | |||| |||||| | | ||| | | ||| ||| ||| ||
Sbjct 2154 TATGCAACTTCTTGAAGTCGTAGCAAGCTTCATCGTAGTTGATGAAGGAGGGCAGAGACA 2095
Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCG 80962
| || || || ||||| || || ||||| |||| || | ||| ||||| ||||| |
Sbjct 2094 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCGATAATTTCAG 2038
Query 80963 TGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020
|||| | || || ||| || ||||| ||||| || ||||| |||| ||||||
Sbjct 2037 TGCAAAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 1980
Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080
|| ||||||||| |||| | ||| | |||||||| ||| | || || |||||||
Sbjct 1979 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 1920
Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140
||||| || | ||||||| |||||| ||||| || | | ||||| ||||
Sbjct 1919 CCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTA 1860
Query 81141 AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199
| ||||||| | |||| | ||| | | |||| | ||||||||||| |||||||
Sbjct 1859 CAGAGCCTCGAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGGCACA 1801
Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259
|||| |||||| || || || ||| ||||||||| ||||||||||| ||||
Sbjct 1800 TCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGGATCCAAAGGG 1741
Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319
| ||| || || ||| || ||||||| | ||| ||||| || | || || |
Sbjct 1740 CAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCCAGGA 1681
Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373
| || | || || | ||||| ||||| || || | ||| | | || | ||||
Sbjct 1680 AATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG- 1622
Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433
||||||||||| ||| || || ||||| ||| || ||||| | |||||| | |
Sbjct 1621 --TTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAA 1564
Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCT 81491
|||||| || |||||| ||||| |||| || || | || || || |||
Sbjct 1563 TACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCA 1504
Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551
||| ||||| || ||||| | | ||| || ||| ||||| || | || ||
Sbjct 1503 CATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 1446
Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611
|| |||||||| || || || | ||||| |||| |||||| || ||| | || ||
Sbjct 1445 GTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTG-GG 1387
Query 81612 GCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670
||| | |||||||||||| || || |||| || || |||| | | | ||||
Sbjct 1386 GCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACA 1327
Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730
|||| | || || ||| ||| || ||||| ||||| ||||| | || ||||
Sbjct 1326 TCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACAC 1267
Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756
|||| | ||||| ||| ||||| ||||
Sbjct 1266 GCATGATCATGTGCTGAGGGCG-CTCG 1241
>seq886
Length=31666
Score = 185 bits (204), Expect = 1e-41
Identities = 170/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || || |||||||||||||| |||| ||| |
Sbjct 10622 GTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACCATCGAC 10563
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || ||||||||||||||||| || ||||| ||||||||||| || ||
Sbjct 10562 AATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGATC 10503
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| |||||||| || || | || ||||| || ||||| || | |||||||||
Sbjct 10502 TTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAAAAGGAA 10443
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||||||||| ||| | || || || |||||
Sbjct 10442 TCTACTCTTCATCTCGTCCTCCGCCTCCGTGGTGG 10408
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| ||||| || ||||| |||||||| || || ||||||
Sbjct 10406 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 10347
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| ||||| || || || ||||||||||| ||||| || || ||
Sbjct 10346 GATACCATTGATAATGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCCCCGGATCAA 10287
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| |||||||| ||||||| || || || | ||||| ||
Sbjct 10286 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 10227
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||| ||||| || | || | |||||||| |||||
Sbjct 10226 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 10180
Score = 158 bits (174), Expect = 1e-33
Identities = 175/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| ||||| || ||||| || || |||||||| || || ||
Sbjct 10178 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 10119
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| || ||||||||||||||||| || || || || |||
Sbjct 10118 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 10059
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| ||
Sbjct 10058 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 10000
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || |||||||| || || | || |||||||| || ||
Sbjct 9999 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGGCCA 9949
Score = 140 bits (154), Expect = 4e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| | ||||||||||| || || || |||||||||||
Sbjct 10919 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 10860
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | || | || | ||| | || ||||||||||||||||| || || || |||
Sbjct 10859 TCCGACACTATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGAC 10800
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||| || | ||||| || || ||||| || ||||| | || || || | || ||
Sbjct 10799 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 10740
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | || ||||| |||||||||||||| || | || || || |||||
Sbjct 10739 AACATTCAGAAGGAGTCCACTCTTCATCTTGTTCTCCGCCTCCGTGGTGG 10690
>seq994
Length=39861
Score = 165 bits (182), Expect = 9e-36
Identities = 175/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 17254 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 17313
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 17314 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 17373
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| ||
Sbjct 17374 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 17432
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| || || ||| | || || ||||||||
Sbjct 17433 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGCCTCCGCGGTGG 17480
>seq586
Length=19764
Score = 129 bits (142), Expect = 7e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || |||||||| ||||| || | ||||
Sbjct 8795 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 8736
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || ||||| ||||| ||
Sbjct 8735 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAACAGCGACTG 8676
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||||||||| || ||||||| || || || | |||||||| |||| |||
Sbjct 8675 ATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTATAACATCCAGAAG 8616
Query 27595 G 27595
|
Sbjct 8615 G 8615
>seq179
Length=39909
Score = 127 bits (140), Expect = 2e-24
Identities = 152/206 (74%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719
|| |||||||| ||||||||||| ||||| | || | || || |||| ||||||
Sbjct 35659 AAGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 35600
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|||| || ||||| ||| || || || ||||| ||| | ||| ||||| |||
Sbjct 35599 CTCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCGCCTTCGCCTCTATCTTC 35540
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||||| || ||||| || || ||||| |||||| | || || |||||||| ||||||||
Sbjct 35539 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 35480
Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865
|||||||| || ||| || |||||
Sbjct 35479 GACGAGGGTCTTCACACTGACTTTGC 35454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570293283559120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |