Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq701 210 3e-49
>seq701
Length=4748
Score = 210 bits (232), Expect = 3e-49
Identities = 597/910 (66%), Gaps = 12/910 (1%)
Strand=Plus/Minus
Query 53756 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 53815
|| || ||||||||||| || | |||||| || | || | ||| || |||||
Sbjct 2210 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 2151
Query 53816 TTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA 53875
||| || |||||||| || || |||||||| | || || ||| |||||| || | |
Sbjct 2150 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 2091
Query 53876 ATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCG 53932
|| || | ||| | ||||||| || | ||| | ||| | ||| |||
Sbjct 2090 ATGGCGTACCAAAGCTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTCG 2034
Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992
|| | |||| || ||||| ||||| | | | | | ||||| || ||
Sbjct 2033 TACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCG 1974
Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052
| || ||||||| | ||| || |||| | | || |||||||| || ||||||||
Sbjct 1973 TTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGG 1914
Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112
|||||||| || | || ||||| | || | ||||| || || |||||
Sbjct 1913 ATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGG 1854
Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172
||||| | ||| | | | |||||| ||||| || || | ||| |||| | | | ||
Sbjct 1853 AGATCCAAGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCG 1794
Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232
|| || ||||| || ||||| || | || | ||| ||||| || | || | | |||
Sbjct 1793 GGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATA 1734
Query 54233 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 54292
|||| ||||||||| |||| ||| ||||| |||| ||| || ||| | |||||||||
Sbjct 1733 GGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATA 1674
Query 54293 T--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350
| | ||| |||||| || || || ||||| || ||||| | || || || |
Sbjct 1673 CGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGA 1616
Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410
||||| ||||| ||||| ||||| || ||| |||| | || | || || || |
Sbjct 1615 GAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATA 1556
Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470
|||| | || ||| || ||||| || | || || ||||| ||||| || | ||
Sbjct 1555 ATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGC 1496
Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACT 54529
||| | |||||||| ||||| | || || ||||| || || | || ||
Sbjct 1495 TAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACA 1437
Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589
| |||||||| | |||||||||||| | || || ||||| || ||||| || | |
Sbjct 1436 GACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGAGG 1377
Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 54649
|| ||| |||||||| || || ||||| || | |||| || || || || || | |
Sbjct 1376 TATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACA 1317
Query 54650 ATAACTGAGT 54659
|| | ||||
Sbjct 1316 ATGGCAGAGT 1307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593707929560160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |