Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq133 104 3e-17
seq423 93.3 5e-14
seq429 84.2 3e-11
>seq133
Length=57550
Score = 104 bits (114), Expect = 3e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || ||| || || | || || |||||||| ||||| ||
Sbjct 39972 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 40031
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||||| || | || |||||||||| ||| || |||| |||
Sbjct 40032 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 40090
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || ||||| || | ||||| || || ||||| || ||||| |
Sbjct 40091 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 40150
Query 43171 CAAAGATTTGCATTTT 43186
| || || ||||| ||
Sbjct 40151 CGAAAATCTGCATCTT 40166
>seq423
Length=39909
Score = 93.3 bits (102), Expect = 5e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||||||||| ||||| || || || || || |||| || || ||||| ||||| ||
Sbjct 21217 TCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAG 21158
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || ||||||||||| | || | || |||||||||| ||| | || | | | | |
Sbjct 21157 ATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTCGACTTAACATT 21099
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || ||| ||| || || || | |||||||| ||||| || || ||||| ||
Sbjct 21098 GTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 21039
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || | || || | |||||||||||||||
Sbjct 21674 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAA 21615
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || |||||||| || | || | | |||||||||| ||| | || | | |||
Sbjct 21614 GATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGT 21556
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| || ||||| || || | |||||||| || || || || ||||| |
Sbjct 21555 TGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGTAAGGGTCTTCA 21496
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 21495 CGAAGATCTGCAT 21483
>seq429
Length=53405
Score = 84.2 bits (92), Expect = 3e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || || || || | ||||| || | || || ||||||||||||||||| |
Sbjct 44599 CCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 44540
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| |||||||| ||||| | || | | |||||||||| ||| || |||| |
Sbjct 44539 TCAGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 44480
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 44479 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 44420
Query 43174 A 43174
|
Sbjct 44419 A 44419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571804433899760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |