Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq701 289 3e-73
seq413 168 6e-37
seq423 123 2e-23
seq133 113 4e-20
>seq701
Length=4748
Score = 289 bits (320), Expect = 3e-73
Identities = 638/954 (67%), Gaps = 2/954 (0%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|||||||| ||||| || || |||||||| || |||||| | |||||| || ||
Sbjct 2255 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGCAA 2196
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || || | || | |||||||| || || ||||| | ||||
Sbjct 2195 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 2136
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | || ||||| ||| | ||| | || || ||| |
Sbjct 2135 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGC 2076
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
||||||| | | ||| || ||| ||| || | ||||||||||| ||||| ||
Sbjct 2075 TTCTGAGCCTTGATG-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 2017
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
|| || || | ||||| |||||||| ||||| || | | | || ||||| || |
Sbjct 2016 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGT 1957
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| || |||||||| ||| |||| |||||||| || ||||| || || |||
Sbjct 1956 CCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAA 1897
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
|| || ||||| || |||||||| || ||| |||||| | |||||| || || ||
Sbjct 1896 AAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCCAAGAAATCGAA 1837
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
|| || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| ||
Sbjct 1836 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 1777
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| ||||| || || || ||||||||| | || | ||||| || || | ||| || ||
Sbjct 1776 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAATACCATTCGA 1717
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
| ||| || || | || || | || |||| ||| || | | |||
Sbjct 1716 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 1657
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
|| || || || || || ||||| || || || ||||| |||||||| |||||
Sbjct 1656 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1597
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745
|| ||||| || || | | |||||||| || || || | ||| | | || || |
Sbjct 1596 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTGGGGCTGAGGAGTGCC 1537
Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805
||| ||| || || ||| || ||||| ||| | | ||||| |||||||| ||
Sbjct 1536 GGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGT 1477
Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865
|| | | | || || || || || ||||| | | || ||||| |||||||
Sbjct 1476 CTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACACGCATGATCATGTG 1417
Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925
||||| | |||||| | |||| |||||||| || ||||| || | || || ||
Sbjct 1416 CTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGAGGTATGATCGCTCCAAAGTCTT 1357
Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
|| ||||| || | || | || || || || | || ||||| || | |||
Sbjct 1356 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 1303
>seq413
Length=40179
Score = 168 bits (186), Expect = 6e-37
Identities = 548/843 (65%), Gaps = 35/843 (4%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|||||| | |||||||| ||||| || || || || ||||| | || || | || ||
Sbjct 36007 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 35948
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAATTTTA--TTAA 57685
|| |||||||| ||| ||| | || | || | |||| ||| | || | |
Sbjct 35947 TCCAAGGATCTTCACGACTGGAACAACCGCCT-GACTGCTGATGAGCAGTTCTTCGTCTC 35889
Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745
||| | | || || ||||| || || |||||||| || |||||||| | ||||| |
Sbjct 35888 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCG 35829
Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805
||| || || || | | ||||| | ||||| ||||| || || | ||
Sbjct 35828 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 35769
Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865
|| ||| | || || || | || || || |||||||| || ||| | ||||| ||
Sbjct 35768 GGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGC 35709
Query 57866 CGAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924
| || ||| || || |||||||| || || || || ||| ||| |||||||| |
Sbjct 35708 CCAGCGAACATAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTG 35650
Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCG 57981
| ||| | ||| |||||| | | | || || | || ||| || | || | |
Sbjct 35649 ACTGGGCCATCCGATGGATCCAG---GATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 35593
Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041
| || || || || || ||||| ||||| ||| ||| || | || || ||| | |
Sbjct 35592 CCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCGCCTTCGCCTCTATCTTCTGGCTCA 35533
Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101
|||| || || || ||||| || ||||| || ||||||| | || || || |||||||
Sbjct 35532 AGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGG 35473
Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT---------TGTCAATAAAC 58152
|||| || ||||| ||||| ||||| | |||||||| | || || ||| |
Sbjct 35472 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGTAAGC 35413
Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212
|| | ||| ||| || ||||| || || ||| | || || | |||||
Sbjct 35412 AGATG---------ATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCC 35362
Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272
|||||||||| || || ||| | ||||| |||||| ||| | ||| ||||||
Sbjct 35361 TCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACA 35302
Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACAC 58330
||||||| || || || | || | ||| || | |||| ||| ||||| |
Sbjct 35301 TTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTC--TACAAGGC 35244
Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390
| || || || || || ||| | ||||| || | |||||||| ||||| |||||
Sbjct 35243 CACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGA 35184
Query 58391 AAA 58393
||
Sbjct 35183 GAA 35181
>seq423
Length=39909
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| || |||||| |||| ||||| | ||
Sbjct 20744 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 20803
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| | ||||| || || ||||||||| ||| | || ||||||||
Sbjct 20804 CGACACTATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 20863
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || | || ||||| ||||| ||| | || ||| ||| | ||||| ||
Sbjct 20864 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 20923
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || || || ||||||||||| || ||
Sbjct 20924 CATTCAGAAGGAGTCCACTCTTCATCTTGTTCT 20956
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || || || |||||| | || || ||| |
Sbjct 21483 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACCATCACCCTTGAGGTCGAATCCAGT 21542
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | || || | || ||||||||| || | || || || |||
Sbjct 21543 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 21602
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||||||||||| | || ||||||| || |||
Sbjct 21603 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 21662
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || || || |||||||| || || || |||| | |||||
Sbjct 21663 ATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGCGG 21709
Score = 104 bits (114), Expect = 2e-17
Identities = 144/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| ||||| || || ||||| || |||||| | || ||||| ||||||| | |||
Sbjct 21037 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCCGATACCATCG 21096
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | || || || || ||||||||| ||| | || || ||||||||||| || |
Sbjct 21097 ACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGA 21156
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| || ||||| || || | |||||| || | ||| || ||||||||||| |
Sbjct 21157 TCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCCTTGCCGACTACAACATTCAAAAGG 21216
Query 31383 AATCGACTCTTCATCTGGTACT 31404
|||| ||||||||||| || ||
Sbjct 21217 AATCTACTCTTCATCTCGTCCT 21238
>seq133
Length=57550
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||||||| | || || || |
Sbjct 40166 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 40107
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || ||||||
Sbjct 40106 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 40047
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| || || || |||||||| ||| | || || || ||||||| ||
Sbjct 40046 CAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 39987
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || ||||| || ||||| ||
Sbjct 39986 AACATCCAGAAGGAGTCCACTCTCCACCTGGTCCT 39952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445756136228640
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