Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq701 208 1e-48
>seq701
Length=4748
Score = 208 bits (230), Expect = 1e-48
Identities = 599/911 (66%), Gaps = 14/911 (2%)
Strand=Plus/Minus
Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846
|| || ||||||||||| || | |||||| || | || | ||| || |||||
Sbjct 2210 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 2151
Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906
||| || |||||||| || || |||||||| | || || ||| |||| | || | |
Sbjct 2150 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 2091
Query 65907 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TC 65962
|| || | ||| | | || ||||||| || | ||| | ||| | ||| ||
Sbjct 2090 ATGGCGTACCAAA-GCTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTC 2035
Query 65963 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 66022
||| | |||| |||||||| ||||| | | | | | ||||| || ||
Sbjct 2034 GTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTC 1975
Query 66023 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 66082
| || ||||||| | ||| || |||| | | || |||||||| || ||||||||
Sbjct 1974 GTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGG 1915
Query 66083 AATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142
|||||||| || | || | ||| | || | ||||| || || |||||
Sbjct 1914 GATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACG 1855
Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202
||||| | ||| | | | |||| | ||||| || || | ||| ||||| | | | ||
Sbjct 1854 GAGATCCAAGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACC 1795
Query 66203 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 66262
|| || ||||| || ||||| || | || | ||| ||||| || | || | | |||
Sbjct 1794 GGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCAT 1735
Query 66263 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322
|||| ||||||||| |||||||| ||||| |||| ||| || ||| | ||||||||
Sbjct 1734 AGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAAT 1675
Query 66323 AT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 66380
| | | ||| |||||| || || || ||||| || ||||| | || || ||
Sbjct 1674 ACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTG 1617
Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 66440
| ||||| ||||| ||||| ||||| || ||| |||| | || | || || ||
Sbjct 1616 AGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGAT 1557
Query 66441 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 66500
| |||| | || ||| || ||||| || | || || ||||| ||||| || | ||
Sbjct 1556 AATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTG 1497
Query 66501 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTAC 66559
||| | |||||||| ||||| | || || ||||| || || | || ||
Sbjct 1496 CTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAAC 1438
Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619
| |||||||| | |||||||||||| | || || ||||| || ||||| | |
Sbjct 1437 AGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGAG 1378
Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679
||| ||| |||||||| || || ||||| || | |||| || || || || || |
Sbjct 1377 GTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGAC 1318
Query 66680 AATAACCGAGT 66690
||| | ||||
Sbjct 1317 AATGGCAGAGT 1307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658157645571280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |