Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq133 93.3 3e-14 seq423 86.0 5e-12 >seq133 Length=57550 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||| || ||| | | ||| Sbjct 39952 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 40011 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | || || ||||| ||||| || | |||||| ||||| Sbjct 40012 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 40071 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||| || | | | | |||||| | |||| || | |||||| || Sbjct 40072 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 40131 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || || || ||||| ||||||||||| ||| Sbjct 40132 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 40167 >seq423 Length=39909 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || |||||||| || | | || | ||||| Sbjct 20956 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 20897 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || |||| | || || ||||| || | |||||| ||||| Sbjct 20896 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 20837 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | ||||||| | ||| || | ||||||||| Sbjct 20836 TGAATCTTCGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 20777 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || ||||| || |||||||| Sbjct 20776 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 20745 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || || |||||||| |||||||||||||| | |||| | |||| Sbjct 21238 AGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 21179 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || || ||| | || || ||||| ||||| ||| | |||||| ||||| Sbjct 21178 TCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 21119 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | || ||| | ||| || | ||||||||| Sbjct 21118 TGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTC 21059 Query 16904 TTTCCGGTCAGCGTTTTGAC 16923 || || || || || ||||| Sbjct 21058 TTGCCAGTGAGGGTCTTGAC 21039 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||| || ||| | || ||||| || Sbjct 21685 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGC 21626 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851 || || || | ||||| ||||| || || || | ||||| ||||| ||| ||| Sbjct 21625 TTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTG 21566 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 || |||||| | | | | |||||| | || || || | ||||||||| ||||| || Sbjct 21565 CT-CTTCACGTTGTCGATAGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTTCCAGT 21507 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 21506 AAGGGTCTTCACGAAGATCTGCAT 21483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405078906027580