Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq701 214 2e-50 >seq701 Length=4748 Score = 214 bits (236), Expect = 2e-50 Identities = 600/911 (66%), Gaps = 14/911 (2%) Strand=Plus/Minus Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 || || ||||||||||| || | |||||| || | || | ||| || ||||| Sbjct 2210 ATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 2151 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 62917 ||| || |||||||| || || |||||||| | || || ||| |||| | || | | Sbjct 2150 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 2091 Query 62918 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TC 62973 || || | ||| | | || ||||||| || | ||| | ||| | ||| || Sbjct 2090 ATGGCGTACCAAA-GCTTCTGAGCCTTGATGGTC---TTGCGACCCTTGCCCTCCTTCTC 2035 Query 62974 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTC 63033 ||| | |||| |||||||| ||||| | | | | || ||||| || || Sbjct 2034 GTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTC 1975 Query 63034 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63093 | || ||||||| | ||| || |||| | | || |||||||| || |||||||| Sbjct 1974 GTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGG 1915 Query 63094 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 |||||||| || | || ||||| | || | ||||| || || ||||| Sbjct 1914 GATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACG 1855 Query 63154 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63213 ||||| | ||| | | | |||||| ||||| || || | ||| ||||| | | | || Sbjct 1854 GAGATCCAAGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACC 1795 Query 63214 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63273 || || ||||| || ||||| || | || | ||| ||||| || | || | | ||| Sbjct 1794 GGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCAT 1735 Query 63274 TGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT 63333 |||| ||||||||| |||||||| ||||| || | ||| || ||| | |||||||| Sbjct 1734 AGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAAT 1675 Query 63334 AT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63391 | | | ||| |||||| || || || ||||| || ||||| | || || || Sbjct 1674 ACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTG 1617 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGAC 63451 | ||||| ||||| ||||| ||||| || ||| |||| | || | || || || Sbjct 1616 AGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGAT 1557 Query 63452 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTT 63511 | |||| | || ||| || ||||| || | || || ||||| || || || | || Sbjct 1556 AATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAACTTG 1497 Query 63512 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTAC 63570 ||| | |||||||| ||||| | || || ||||| || || | || || Sbjct 1496 CTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAAC 1438 Query 63571 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63630 | |||||||| | |||||||||||| | || || ||||| || ||||| | | Sbjct 1437 AGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGAG 1378 Query 63631 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63690 ||| ||| |||||||| || || ||||| || | |||| || || || || || | Sbjct 1377 GTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGAC 1318 Query 63691 AATAACCGAGT 63701 ||| | |||| Sbjct 1317 AATGGCAGAGT 1307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633617410623200