Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq413 131 3e-25
seq902 107 4e-18
seq701 107 4e-18
seq189 102 2e-16
>seq413
Length=40179
Score = 131 bits (144), Expect = 3e-25
Identities = 397/608 (65%), Gaps = 19/608 (3%)
Strand=Plus/Plus
Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601
|| || |||| ||||| |||||||| || | |||||| | || ||||| ||||
Sbjct 35163 TGGTAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCC 35222
Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661
||||||||||||||||| ||||| ||||| ||| | |||||| || || | ||
Sbjct 35223 ATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGA 35282
Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721
|| || || || ||||| | ||||| ||| || |||||||||||||| | | |
Sbjct 35283 CGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCA 35342
Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781
|| |||| || || || ||| |||| || ||| || || || | || ||
Sbjct 35343 CAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATATCC 35402
Query 251782 T---TCACCTG-----TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC 251833
| ||| ||| || || ||| |||| || | |||| ||||| |
Sbjct 35403 TGGATCATCTGCTTACTGGCA-CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGG 35454
Query 251834 CAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAG 251893
|||| | ||| ||||||||||| ||| ||||| ||||||||| | ||| ||||
Sbjct 35455 CAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAG 35514
Query 251894 GCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGAC 251953
|||| | ||||| ||| ||||||||||||| | | |||| ||| ||| | | ||
Sbjct 35515 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATAC 35574
Query 251954 CCTCGACACACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-AC 252012
|||| ||| | | ||||| || |||| ||||| || ||||| | || |
Sbjct 35575 CCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCC 35634
Query 252013 TTCTG--TGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGA 252070
|| | ||||| | |||||||||| | ||| || || || || || | ||||
Sbjct 35635 ATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGA 35694
Query 252071 GAGAGTTCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCG 252130
|| | | |||| ||| |||| |||| | || | ||||| ||||| |||| |
Sbjct 35695 GATATGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGG 35754
Query 252131 AATGGATG 252138
| || |||
Sbjct 35755 AGTGAATG 35762
>seq902
Length=17877
Score = 107 bits (118), Expect = 4e-18
Identities = 161/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| ||||| || || || |||| |||||||| || |||
Sbjct 14175 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 14234
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| |||||||||| | || || ||||| ||||||||| || |
Sbjct 14235 CAGACCCATCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 14294
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||||||||| |||| ||| | || || || ||||| |||
Sbjct 14295 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 14353
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
||||| | ||| || | || ||||||||| | |||||| ||
Sbjct 14354 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCCGCT 14399
Score = 84.2 bits (92), Expect = 4e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| || ||||| ||||| || ||| ||||| |||| | | ||
Sbjct 15577 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGACTGTCCTTGCCGCTT 15636
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | ||||| | ||||| || |||||||||||||||||||| || ||
Sbjct 15637 GCTCT-TGGCAGCGACCTCATCTTATCGTCCTTGACGAGCCTACCAACTATCTCGATCGT 15695
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| || ||||| |||
Sbjct 15696 GACTCTCTCGGCGCCCTG 15713
>seq701
Length=4748
Score = 107 bits (118), Expect = 4e-18
Identities = 452/699 (65%), Gaps = 15/699 (2%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173
||| | |||||| | |||||||| ||||||||||| | | || || || | | ||
Sbjct 3033 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 2975
Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233
|||||||||| |||||||||| ||||||||||| | | | ||| || ||||
Sbjct 2974 AGATCTCCCAGACAGTCTTGTACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCT 2915
Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292
| || || || | ||||| || |||||||||| | |||||||| || |||| |
Sbjct 2914 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG- 2856
Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352
| | || || || || | | ||||||||| ||||||||||||||||| ||
Sbjct 2855 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGG 2796
Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412
|| ||| || || || ||| ||| ||| ||| || ||||||| |
Sbjct 2795 CGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGAG 2736
Query 293413 GTAGATGCGGTAGGCATAAGAGC-AGTCGTCAGAGAGTTCCTCACACCCT---TCTTGAC 293468
||| || ||||||||| |||| || | |||| ||| | | || | |||||||
Sbjct 2735 GTACTGGCAGTAGGCATAGGAGCGAGGAG-CAGACTGTTACGGATGCCGTGTGTCTTGAC 2677
Query 293469 ACGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGA 293526
| | ||| | |||||| |||||| ||| || || | || ||| | | |
Sbjct 2676 TTCCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCA 2619
Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586
|||| | |||||||| ||| || || |||| ||||||| | ||| || | |||
Sbjct 2618 AACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCC 2559
Query 293587 TCAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACG 293645
| || |||| ||| || || | ||||| || ||| ||| |||||||
Sbjct 2558 TTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGATAGATGGTCTCAAAGATCTGCTT 2500
Query 293646 GTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTG 293705
|||||||| ||||||| || || || ||||| ||| | ||| ||||
Sbjct 2499 GTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAGC 2440
Query 293706 CAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGG 293765
|| ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| |
Sbjct 2439 AAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTG 2380
Query 293766 AACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
|| | || ||||||| ||| || ||| ||||||
Sbjct 2379 GACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 2341
>seq189
Length=29394
Score = 102 bits (112), Expect = 2e-16
Identities = 142/197 (72%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| ||||| || || || |||||||||||||||||||| || | || || || || |
Sbjct 14476 AGTTGGTTCCCTCTCTGGAGGTTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 14535
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
||||||||| |||||||| || || || || || ||||| | || ||||| | ||
Sbjct 14536 GCGTGCCGACGTCCTACTTCTCGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 14595
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872
|||||| | | |||||| | ||||| | || | | |||||||| ||||||
Sbjct 14596 CTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 14653
Query 279873 GACTCTGGCTTCCTAGA 279889
||||| || ||||| ||
Sbjct 14654 GACTCCGGATTCCTGGA 14670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027812542409122
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |