Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq413 389 7e-103 seq701 304 2e-77 >seq413 Length=40179 Score = 389 bits (430), Expect = 7e-103 Identities = 601/846 (71%), Gaps = 18/846 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 35998 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGAT 35939 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || ||| ||| | || |||| ||| || |||| | Sbjct 35938 CTTCACGACTGGAA--CAACCGCCTGACTGCTGATGAGCAGTTCTTCGTCTCTCACATCC 35881 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 35880 TTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCGATTCAGTG 35821 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || |||||||||||||||||||| || |||||| Sbjct 35820 GCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 35761 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| ||| || || || |||| |||||| ||| |||| | |||| | Sbjct 35760 TTCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGCCCAGCGAA 35701 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 || ||||| ||||| ||||| || ||||||||| |||||||| |||||||| Sbjct 35700 CATATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 35641 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| || | ||| | | || | | || | || || |||||| | || | Sbjct 35640 TCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTG 35581 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTG 42782 | ||||| ||||||||| |||||||||||||| ||||||||||||||| || ||| Sbjct 35580 TTGAGGGTATCTTCTTCAGTGGCGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTC 35521 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || || |||||||| ||||| |||||| | |||||||| || || | Sbjct 35520 TC-ATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACT 35462 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||||| ||| |||||| ||| | | || ||| || | | Sbjct 35461 GACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTG-CCAGTAAGCAGATGAT 35406 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 || || |||||||| || ||||| || ||| ||||||||||||| | | || || Sbjct 35405 CCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACCGAAGCTCTTCC 35346 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | ||| |||| ||||||||||| ||||||||| ||||||| ||| |||||| | Sbjct 35345 CTGTG-CCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 35287 Query 43021 ACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 | | ||||| ||| | ||| || | ||||||| | | |||||||||| Sbjct 35286 ATCGTCTCCTTGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCCACCAACCCCTTCGAC 35228 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 || |||||||||||||| | | |||||||||||||| ||||||||||| || || ||| Sbjct 35227 TTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCTGAC 35168 Query 43140 TACCAG 43145 |||||| Sbjct 35167 TACCAG 35162 >seq701 Length=4748 Score = 304 bits (336), Expect = 2e-77 Identities = 885/1343 (66%), Gaps = 41/1343 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| ||| | || || Sbjct 2829 GTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGG 2770 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| ||||||||| ||||| | || || ||||| ||||| || | | Sbjct 2769 CTCGAAGCACTCGTTGTTGCCCAAAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCGAG 2710 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 2709 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 2659 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||||||||| || | |||| Sbjct 2658 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCAAACTGGAGGATACCCTCAG 2600 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | ||||| |||| | |||| | ||||||||| || || ||||||| || | Sbjct 2599 AGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGG 2540 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||||||||||| |||||| |||||| | || || |||| | Sbjct 2539 CAGT-GAGGGCAGCGTGATAGATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCG 2481 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| || | || | ||| | || || || ||||| || || | Sbjct 2480 GGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCAAGA 2421 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| |||| | || | || | || || ||||| ||| | Sbjct 2420 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCAC 2362 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 ||||| | |||||| |||||||| | | || | ||| ||| | || | || | Sbjct 2361 ATCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTATGCAACTTCTTGA 2303 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | | | || ||| | || ||| | | | || | || Sbjct 2302 AGTCGTA---GCAAGCTTCATCGTAGTTGATGA-----AGGAGGGCAGAGACAGAGA--- 2254 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| ||||||||||| || ||||| || | | ||||| || ||| || ||||| | Sbjct 2253 -GGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGCAAA 2195 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 |||| || |||||| || |||| || || ||| |||| ||||||||| |||| Sbjct 2194 GGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 2135 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || |||||||| |||||| | || | | || ||| || | Sbjct 2134 TGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCT 2075 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| ||| ||||| |||||||||| |||||| |||||| |||| Sbjct 2074 TCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCT 2015 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| || || ||| | ||||| |||||| |||||||| || ||| Sbjct 2014 CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCC 1955 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || ||| | | || | | |||||| || || |||||||| ||||| |||| | Sbjct 1954 AGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAA 1895 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | || | ||| ||| || |||||| | || ||||| || || |||| Sbjct 1894 GATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCCAAGAAATCGAAGA 1835 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || |||||| ||||| | ||||| || | || ||||| ||||||||||| |||| Sbjct 1834 CATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCT 1775 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | ||| | ||||| |||||||| || || |||| || || || || Sbjct 1774 GGTCGA-CATAC---CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAATACCATTC 1719 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGC-CCCTGAGGTTGCTGATGGACA 245279 || |||||||| || |||||| | ||| | || | | | ||| || | | Sbjct 1718 GATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGA 1659 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || ||||||||| | ||| ||| |||||| || || || | Sbjct 1658 --CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTC 1601 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| || ||||| |||||| | | || ||||| || || | ||||||| || Sbjct 1600 CCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTGGGGCTGAGGAG 1541 Query 245400 TGCACGAGTTGAACAGAGTGGGG 245422 ||| | ||||| || |||||| Sbjct 1540 TGCCGGCATTGAAGAGCGTGGGG 1518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944317456589920