Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq413 181 1e-40 seq701 178 2e-39 >seq413 Length=40179 Score = 181 bits (200), Expect = 1e-40 Identities = 538/819 (66%), Gaps = 27/819 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 35165 GTAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 35224 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || | | | |||| |||| ||| Sbjct 35225 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGG 35279 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| |||| Sbjct 35280 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 35339 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || || || || |||| ||| ||||||| || || || | ||| Sbjct 35340 GCACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 35399 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 35400 TCCTGGATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 35456 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||||||||| |||||||| || || |||||| |||||| ||| Sbjct 35457 AAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGC 35516 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | |||| ||||||||| ||| Sbjct 35517 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCC 35576 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || ||| || || |||| ||||||| |||||||||| | ||| | | ||| Sbjct 35577 TCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 35636 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 || ||||| | ||||| || ||| || || | ||||| || || | ||||| Sbjct 35637 CGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGA 35696 Query 127763 TCCTTCTTTTCT--GATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGC 127820 | | || || | || || |||||||| | || ||||| || || || ||| Sbjct 35697 T--ATGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGG 35754 Query 127821 CGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 127879 ||| | | | ||| || | ||| | ||||||| | || || ||| ||||| Sbjct 35755 AGTGAATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGG 35813 Query 127880 ACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 127938 ||||| | | ||| | | || ||||| || || ||||| || |||| || Sbjct 35814 ACCTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAA 35872 Query 127939 AAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTC 127995 || || ||||| | | ||| ||| |||| | ||| || | |||||||| Sbjct 35873 GAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTGTTCCAGTC 35932 Query 127996 GTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || |||||||| |||||||| | |||||| |||||||| Sbjct 35933 GTGAAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCA 35971 >seq701 Length=4748 Score = 178 bits (196), Expect = 2e-39 Identities = 1095/1729 (63%), Gaps = 63/1729 (4%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 3166 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTCTTGAGGC 3107 Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 | |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 3106 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 3048 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 | ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 3047 TGAATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 2988 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || | | ||| ||||| ||||| |||| || ||| | ||| | ||||| Sbjct 2987 ACCTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACATCGGCAGGGATG 2928 Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 | || || || || || ||| | || ||| || | | ||||||| | | Sbjct 2927 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 2871 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| ||||| || | || |||| | | ||| | |||||||| || Sbjct 2870 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAA 2815 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 |||||| ||||| || | | ||||| |||| ||||| ||||| |||||||| || Sbjct 2814 CTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCACTCGTT 2755 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| ||||| || |||| || ||| || ||||| || || | ||| || ||||| || Sbjct 2754 GTTGCCCAAAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCGAGGAGCAGACTGTTACG 2695 Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || || | | | | | | || || | | |||||||| || | | | Sbjct 2694 GATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGC 2637 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| ||||||||||||||||| | || || || || |||| || || Sbjct 2636 TTGACGTTCCACATGTCAAACTGGAGGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTG 2577 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| |||| | ||||| || |||||| |||||||| Sbjct 2576 GAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAG 2520 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 || |||||||| || | || | | |||||| || || || | | ||| Sbjct 2519 ATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG- 2461 Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || |||| || || || || ||||| || ||||| || || || | ||| Sbjct 2460 CAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCAT 2401 Query 116292 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||| || ||||| || || || || ||| |||||| | | | || || || Sbjct 2400 GTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 2341 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 | ||||||| ||| | ||| | ||| | | | || | || || |||| Sbjct 2340 GCGAATAACAACCTGACTGACCTTATGCAACTTCTTGAAGTCGTA---GCAAG---CTTC 2287 Query 116412 ATTG-ACATACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATC 116465 || | | | | | | ||||| | || || || || || |||| | ||| || Sbjct 2286 ATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTC 2227 Query 116466 CTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTT 116525 || |||||| |||||||| || || | || || || ||||| || | ||| Sbjct 2226 AGGGGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTT 2167 Query 116526 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 |||||| || ||| ||| || ||||||||||||||||| |||| | || ||||| Sbjct 2166 CTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTC 2107 Query 116586 CGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTC 116644 || |||| || ||||| || | ||| | | || | | || | ||| ||| | Sbjct 2106 AGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG----ATGGTCTTGCGAC 2051 Query 116645 GC---CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCT 116700 | ||||||| |||||||||| ||| || ||||| ||||| || || ||| || Sbjct 2050 CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCGTAGCAGTCG 1992 Query 116701 GAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGC 116760 | ||| || || || | || || | || | ||| | ||| || ||||| || Sbjct 1991 GCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGT 1932 Query 116761 TTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCA 116820 |||||||| || || |||||||| || || ||| ||||| || || | || || Sbjct 1931 TTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCC 1872 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || ||| | ||||| || || | || ||| | |||||| || || ||| Sbjct 1871 TTACCGTGGTTCTTACGGAGATCCAAGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGG 1812 Query 116881 TACACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGC 116936 || | || | | ||| | || | | ||| |||||| ||||||| || || Sbjct 1811 TAGATGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATACCGAGCAGTGTT 1753 Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATA 116994 ||| || || |||||||| |||| ||||||| ||| || || || || ||| || Sbjct 1752 GTTGAAGACACGAAGCATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTA 1693 Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 ||| | | || | | | ||| | | | ||||||||| || ||| ||| ||| Sbjct 1692 TGAGCC--AGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTTGGAG 1635 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || || || | ||||| | ||||||| || || || ||| |||| | | Sbjct 1634 ATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCA 1575 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 | | |||||| || | ||| ||| || || || || |||||||| || || | Sbjct 1574 ACCAAGAAGCAAGATGATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAA 1515 Query 117175 GCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGAC 117221 || || ||| | | |||| |||||| || ||| ||||||||||| Sbjct 1514 GCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGAC 1468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613493073996720