Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq423 138 1e-27
seq133 125 8e-24
seq429 96.9 4e-15
>seq423
Length=39909
Score = 138 bits (152), Expect = 1e-27
Identities = 148/193 (77%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| || || |||||||| |||| || |||||||||||||||||
Sbjct 20936 CTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 20877
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||||||| |||||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 20876 AATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 20818
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| |||| || || |
Sbjct 20817 TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 20758
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 20757 CGAAGATCTGCAT 20745
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| |||||||| || |||||||||| || || || |||| ||
Sbjct 21235 ACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCA 21176
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| || || || |||| |||||||||||| | || | || ||||||||||
Sbjct 21175 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 21116
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||| | | | | || ||| ||| || || || | |||||||| |||
Sbjct 21115 ATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTG 21056
Query 46565 CCCGTCAGCGTTTTAAC 46581
|| || || || || ||
Sbjct 21055 CCAGTGAGGGTCTTGAC 21039
Score = 93.3 bits (102), Expect = 5e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| ||||| || | || || || |||||||| |||||
Sbjct 21445 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAG 21386
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | ||||| || || | || | | ||||||||| |||||| |||| | |
Sbjct 21385 ATGAGTCGCTGTTGATCCGGGGGAATACCCTCCTTGTCTTGGATCTTGCTCTTCACATTA 21326
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || ||| || || || |||| || ||||| || || || || || || ||
Sbjct 21325 TCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACG 21266
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 21265 AAGATTTGCAT 21255
>seq133
Length=57550
Score = 125 bits (138), Expect = 8e-24
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||| || ||||| | || |||||||||||||| || ||
Sbjct 39972 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 40031
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 40032 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 40090
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || ||||| || | ||||| || || ||||| || || || |
Sbjct 40091 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 40150
Query 46581 CAAAGATTTGCATTTTGC 46598
| || || ||||| ||||
Sbjct 40151 CGAAAATCTGCATCTTGC 40168
>seq429
Length=53405
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| || |||||||| ||||| || | || || |||||||| || ||||| |
Sbjct 44599 CCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 44540
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| ||||| ||||| | || | | |||||||||| |||||| ||||| |
Sbjct 44539 TCAGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 44480
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 44479 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 44420
Query 46584 A 46584
|
Sbjct 44419 A 44419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565225385385840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |