Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq423 138 1e-27 seq133 125 8e-24 seq429 96.9 4e-15 >seq423 Length=39909 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || || |||||||| |||| || ||||||||||||||||| Sbjct 20936 CTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 20877 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||| |||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 20876 AATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 20818 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| |||| || || | Sbjct 20817 TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 20758 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 20757 CGAAGATCTGCAT 20745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||| || |||||||||| || || || |||| || Sbjct 21235 ACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCA 21176 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || |||| |||||||||||| | || | || |||||||||| Sbjct 21175 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 21116 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||| | | | | || ||| ||| || || || | |||||||| ||| Sbjct 21115 ATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAACCTCAAGGGTGATGGTCTTG 21056 Query 46565 CCCGTCAGCGTTTTAAC 46581 || || || || || || Sbjct 21055 CCAGTGAGGGTCTTGAC 21039 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| ||||| || | || || || |||||||| ||||| Sbjct 21445 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAG 21386 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| || || | || | | ||||||||| |||||| |||| | | Sbjct 21385 ATGAGTCGCTGTTGATCCGGGGGAATACCCTCCTTGTCTTGGATCTTGCTCTTCACATTA 21326 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || || || |||| || ||||| || || || || || || || Sbjct 21325 TCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACG 21266 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 21265 AAGATTTGCAT 21255 >seq133 Length=57550 Score = 125 bits (138), Expect = 8e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || |||||||||||||| || || Sbjct 39972 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 40031 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 40032 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 40090 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 40091 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 40150 Query 46581 CAAAGATTTGCATTTTGC 46598 | || || ||||| |||| Sbjct 40151 CGAAAATCTGCATCTTGC 40168 >seq429 Length=53405 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| || |||||||| ||||| || | || || |||||||| || ||||| | Sbjct 44599 CCTTCTGGATGTTATAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 44540 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||| ||||| | || | | |||||||||| |||||| ||||| | Sbjct 44539 TCAGTCGCTGTTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 44480 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 44479 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 44420 Query 46584 A 46584 | Sbjct 44419 A 44419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565225385385840