Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq285 284 2e-71 seq701 120 4e-22 seq172 93.3 5e-14 >seq285 Length=40966 Score = 284 bits (314), Expect = 2e-71 Identities = 982/1529 (64%), Gaps = 27/1529 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || ||||| | | ||| || || || || || || Sbjct 19406 TCATCCTCCTCCTTGTACTTCTCAGCATCGTTAAGCATGCGCTCGATCTCCTCCTTGGAC 19465 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| ||||| ||||| |||||| | ||| || || | | |||| || | Sbjct 19466 AGGCGGCCCTTGTCATTGGTAATGACAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACG 19525 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 19526 GCGGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTGACCTCAATCTGGGGAACA 19585 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || ||||| || | || || | || | | | |||| ||| | Sbjct 19586 CCACGAGGAGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATAAGATTGTTGTCCTTA 19645 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || ||||| | || || |||| || || || Sbjct 19646 GTGCGTTGACGCTCACCCTCGTAGACCTGGATAAGAACACCAGGCTGGTTGTCGGAGAAG 19705 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || |||| | |||| Sbjct 19706 GTGGAGAAGACCTCAGACTTCTTTGTGGGGATGGTGGTGTTGCGGGGGATAAGCTTGGTC 19765 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| || |||| || ||||| || || | || || |||| | |||| Sbjct 19766 ATCATACCACCAGCGGTCTCGATACCGAGAGAGAGGGGGGCGACATC-AAGA--AGCAGG 19822 Query 6989 -TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACC 7036 ||| | || || |||| |||| | | || ||||| ||||| Sbjct 19823 ATCTCG------TTGGTGGCCTTGCTGGAGGTATCACCGGAGAGAATCGCGGCCTGGACG 19876 Query 7037 GTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTA 7096 | || ||||| || || |||||||| ||||| || | || || | || || ||||| Sbjct 19877 GCGGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTG 19936 Query 7097 AAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACG 7156 || || || | | | | || | || || || || || |||||||| | || Sbjct 19937 AAGTAGTCGGTAATGAGCTTCTGGACACGGGGAATACGGGTAGAGCCACCGACGAGGACA 19996 Query 7157 ATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 || || | || || || |||||||| | ||| || ||||| || | Sbjct 19997 ATCTCGTGGACAAGAGACTTGTCGATCTTGGCGTCGGTGAGGACACGGTCGACGGGCTGG 20056 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 || ||||| | ||| || || ||||| ||||| |||||||| || || || Sbjct 20057 ATGGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATAGAGGTG 20116 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| |||| || ||| | | || || || || || | || || || | || || Sbjct 20117 TAGAAGTCAATACCCTCGAAGAGAGAGTCGATCTCGATAGAGGTCTGAGCAGAAGAGGAA 20176 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | |||||||| || || ||||| || ||||| | ||| || || || || ||| | Sbjct 20177 AGTGTTCGCTTGGCACGTTCACAAGCAGTTCGGAGACGTCGCAGAGCGCGGACGTTGGTG 20236 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || ||||| ||| | ||| || || | |||||| | || | Sbjct 20237 CTAAGGTCCTTCTTGAATTTCCTTTTGAATTCGTTTACGAAGTGGTTGACCAGACGGTTG 20296 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||||||||||||||| || || || || || | ||||| || |||||||| Sbjct 20297 TCAAAGTCTTCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCC 20356 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || || |||||||| || || || || || ||| Sbjct 20357 TCCTCAATGGTAAGGAGAGACACATCGAAAGTGCCACCACCAAGATCGAAGATCAGGACG 20416 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || ||||| Sbjct 20417 TTGCGCTCGCCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGTTCG 20476 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || ||| ||| || || || || | ||||| || || ||||| || Sbjct 20477 TTGATGATTCGGAGAACGTTAAGACCGGCGATGAGACCAGCATCCTTGGTGGCTTGACGC 20536 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||||| |||||||| ||||| || || || |||| |||| ||| || || Sbjct 20537 TGAGAATCGTTGAAGTAGGCAGGGACAGTAACAACGGCGTTGTTGACAGTCTCGCCAAGG 20596 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| |||||||| | ||| | || ||||| || | | Sbjct 20597 TAAGACTCAGCGGTCTCGCGCATCTTGGTAAGGATCATAGCAGAGATCTCCTCGGGGGTG 20656 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || || || || || || |||| ||| || | | | Sbjct 20657 AAGGTCTTGGTCTCGCCCTTGAACTCGACCTCGATGTTGGGCTTA---CCACCCTTGTCG 20713 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | ||| | | ||| ||||||||| | || |||| ||| | ||||| | Sbjct 20714 ACGATCTTGAAGGGGAAATGCTTCATATCGGCCTGAACCTCAGCGTCGGCGAACTTGCGA 20773 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| || || || || ||||| | |||||||| || ||||||||| Sbjct 20774 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGAGGGTTCATAGCGACTTGGTTCTTG 20833 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || ||||| | || ||||| ||| Sbjct 20834 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 20890 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || |||||||| || || || || Sbjct 20891 CGGTTACCCTGGTCGTTGGCGATGATATC 20919 >seq701 Length=4748 Score = 120 bits (132), Expect = 4e-22 Identities = 528/824 (64%), Gaps = 39/824 (5%) Strand=Plus/Minus Query 105319 ATCGTACCAACGTGTTTATGGTTCGACTTTTCATTACACGCGTCTTTGTAAAGCATATAT 105378 || ||||| | || || ||||| ||| || || || || ||||| ||||| || Sbjct 2180 ATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAT 2121 Query 105379 GGGGTTCCCGTTTCACTTTGGGATTTAATAATTGCTTTCCAAATCTCCGAAGC-----TG 105433 ||| |||| || ||| | |||| | || ||| || | ||||| || | ||| || Sbjct 2120 GGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATG 2061 Query 105434 GTACAACTTTAG----TTGCGATACCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAAC 105489 || ||| | |||| | ||||| ||||| || ||||| ||| | || ||| Sbjct 2060 GT----CTTGCGACCCTTGCCCT-CCTTC----TCGTACTTTTCGTACAGAGCCTCGAAC 2010 Query 105490 TCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACAAAACAATGACCAATTA 105549 || | ||||| ||| | || || || | || || | || || ||| | | Sbjct 2009 TCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCA 1950 Query 105550 CCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGC--TGAAAAGAGGT 105607 || | |||||| ||||||||||| | ||| || ||||| | ||| ||||||| | Sbjct 1949 CCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGA--T 1892 Query 105608 CTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATAT 105667 | || | |||| || | ||| || ||| ||| | || | ||||||| | || Sbjct 1891 CACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCCAAGAAATCGAAGACAT 1832 Query 105668 CGGCGTGCCATGGTTCTAAATAGACTGCAATAG-ACC------CTTTACGACGCCCCGCT 105720 | | |||||| || || | |||| |||| || ||| ||| | ||| | | Sbjct 1831 CAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT---GTTGCCAC-CC 1776 Query 105721 TGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGAT 105780 || | |||||| | || || ||| | || || | ||| |||| |||||||| ||| Sbjct 1775 TGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAATACCATTCGAT 1716 Query 105781 GTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCA 105840 || || || || || || | ||| | | ||||| | | ||| || | || ||| Sbjct 1715 GTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACCA 1656 Query 105841 ATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCG 105900 ||||| |||||| ||| ||| ||||| || | |||||||| || || || Sbjct 1655 ATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCA 1596 Query 105901 ATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACC 105959 ||||| || ||||| | ||| || ||| || ||||| | ||| || ||| || || || Sbjct 1595 ATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTG-GGGCTGAGGAGTGCC 1537 Query 105960 AGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTAT 106017 |||||||| || || || | ||||| |||| || ||| | || | | | |||| Sbjct 1536 GGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAGAA--CTTGCTAGACATCAGATTGTAT 1479 Query 106018 GTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGAGA 106077 || |||| ||| | || ||||| | || ||||||| || || ||||| | Sbjct 1478 GTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACACGCATGATCATG 1419 Query 106078 TATTGGGGTGTTTCAATAATTTCACCGTCAATTTTCTGGAGATA 106121 | || || || | ||| | |||||||||||| |||| || Sbjct 1418 TGCTGAGGGCGCTCGACAATCTTACCGTCAATTTTGAGGAGGTA 1375 >seq172 Length=68174 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 55368 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 55309 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 55308 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 55252 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 55251 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 55193 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 55192 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 55133 Query 7695 GTTG 7698 | || Sbjct 55132 GCTG 55129 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || | Sbjct 55070 CGTTGAAGTAGGCAGGGACGGTAACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 55011 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| ||||||||| | || ||||| |||| | ||||| | Sbjct 55010 CAGCGACCTCCTTCATCTTGCCAAGAACCATAGCAGAGATCTCCTCAGGAGTGAACTGCT 54951 Query 7824 TC 7825 || Sbjct 54950 TC 54949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635118176067280