Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq701 255 7e-63 seq106 104 3e-17 seq214 89.7 6e-13 >seq701 Length=4748 Score = 255 bits (282), Expect = 7e-63 Identities = 1087/1693 (64%), Gaps = 61/1693 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 ||||| || ||||| || || ||||| ||| |||||| || | || | ||||| | Sbjct 3134 CGAAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGT 3076 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||||| ||||| |||||||| ||||| Sbjct 3075 GATCTTGCCCATCGTGGGGTCCTTCATGTGAATGTTCAGTGACTGGGACTGATCAATGAA 3016 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAG 109582 ||| |||||||| ||||| | | || | | ||| | | |||||||||| Sbjct 3015 GGCACCTCGATCAGCAGCCATCTGAACGA----CCTGGCGCTGAGAGATCTCCCAGACAG 2960 Query 109583 TCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC--- 109639 ||||||||| | ||||| ||| | || |||| ||||| ||||| || ||| Sbjct 2959 TCTTGTACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCT 2900 Query 109640 CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699 |||| | | || | | |||||| | | ||||| ||||| | | | || | || Sbjct 2899 CAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGTCGACAAGGT 2846 Query 109700 CAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 | || || | ||||| || || |||||||| || || || |||||| Sbjct 2845 CCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGGCGTTGGTAGA 2786 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 | || | |||||||| ||||| ||||| |||||||| | || || | || || | Sbjct 2785 TATTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAAATCTGGGAGGTACTGGCAG 2726 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876 | ||||| ||||| | ||| |||||||| |||| || | ||||| || ||| || | Sbjct 2725 TAGGCATAGGAGCGAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAA 2666 Query 109877 TTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936 | ||||| || | | || | || | | |||||| || || | Sbjct 2665 GAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGTCAAACTGGA 2612 Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCA 109996 | | |||||||| || || ||||||||||| | ||| | ||||| ||| |||| Sbjct 2611 GGATACCCTCAGAGGCGGGGGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCA 2552 Query 109997 ACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 || | | | || | | || || || ||||| || |||||||| || || || || Sbjct 2551 GCT-GCACGGAGGCAGTGAGGGCAGCGTGATAGATGGTCTCAAAGATCTGC---TTGTTG 2496 Query 110056 AGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAG 110111 || |||| ||| | |||||||| | || || || || || |||| || || Sbjct 2495 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCAAGGAAAGCATCAGCAAG 2437 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||||||||| ||||||||||| || || ||||||| | ||||| | || Sbjct 2436 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGAC 2377 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||| ||| ||||||| | || || || | ||| || ||| | Sbjct 2376 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 2317 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGAGCAA 110290 ||| | || | | | ||| | | | || | || |||| | ||| |||| | Sbjct 2316 ATGCAACTTCTTGAAGTCGTA-GCAAGCTTCATCGTAGTTGATGAAGGAGGGCAGAGACA 2258 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 ||| ||||| ||||| |||| |||||| | | ||| || | |||||| || | Sbjct 2257 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCGATAATTTCAGTGC 2198 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 | | |||||| || ||| ||| | |||||| || || ||| |||||| |||| Sbjct 2197 AAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCAT 2138 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| ||||||||| ||||| | || || || ||||| | || |||||||| | ||| | Sbjct 2137 CCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA 2078 Query 110471 -CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACA 110527 | || | | | | | || |||| | | || |||| ||||||||| ||||| Sbjct 2077 GCTTCTGAGCCTTG-ATGGTCTTGCG--ACCCTTGCCCTCCTTCTCGTACTTTTCGTACA 2021 Query 110528 AGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 |||| || |||| |||||| || | || || || || ||| || | | Sbjct 2020 GAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCA 1961 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 | | ||| | || || ||||| | |||||||| || ||||| ||||| | || Sbjct 1960 GTGTCCAGTCACCGTTCTTTTCAACACGTTTCATGAAAAGATCAGGGATCCAAAGGGCAA 1901 Query 110648 AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGT 110707 |||||| |||||| ||| |||| || | ||| ||||| || || ||||| || | Sbjct 1900 GGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCCAAGAAAT 1841 Query 110708 CCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT------GGATCCCTTACGAC 110761 | | || ||| |||||||| || ||||| |||| || | || || ||| | Sbjct 1840 CGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGC 1781 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 |||| |||| ||||| || || ||| |||||||| | |||||||||| ||| | Sbjct 1780 CACCC---TGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAATAC 1724 Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881 ||| ||| ||| || ||||| || || | | |||||||| ||| | || Sbjct 1723 CATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACAT 1664 Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAA 110940 | |||||||||||| ||| ||| || ||||| ||| |||| ||| | || Sbjct 1663 TTAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGAGTATCGTAG 1605 Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA 111000 || || ||||| || |||| | ||| | |||||||| || | || || || Sbjct 1604 ATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTGGGGCTGA 1545 Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCT 111058 || || || ||||||||||| || || | ||||| ||| ||| |||| |||||| Sbjct 1544 GGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGA--AGAACTTGCTAGACATCA 1487 Query 111059 TGTTGTATGTGTC 111071 |||||||| || Sbjct 1486 GATTGTATGTCTC 1474 >seq106 Length=88366 Score = 104 bits (114), Expect = 3e-17 Identities = 278/416 (67%), Gaps = 18/416 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || ||||| || | | || | || || ||||| | || || || || Sbjct 41903 CGGTCAAATCGCCCTGGTCGCATCAAGGCCTTGTCGAGCATATCCGCTCGATTGGTGCCG 41962 Query 11563 GCAATGACTACAATGCCAG-TCTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 |||| || |||| || | || | | | | ||||||||||||||| ||||||| ||||| Sbjct 41963 GCAAGAACAACAA--CCTGCTCACGAGTATTGAAACCGTCCATTTCAGTGAGAATCTGGT 42020 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGCCGAACGCTTCTTACCG 11679 | | || ||| |||||||||||| | | || || | |||| | | | | | Sbjct 42021 TCAGAGTTGCTTCCCGCTCATCGTTGCCACCGAATCCC--CGGCCGCTCTCCTGTCGCGC 42078 Query 11680 ACA-------GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 || ||||||||||| || ||||| | ||| || || ||| |||| | | Sbjct 42079 ACGTCCAATTGCGTCAATCTCGTCAATGAAGATGATGCAAGGGGCGTTCTTACGTCCTTC 42138 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG- 11791 |||| | || | |||||| | ||| ||||| || ||||| |||||||| | | Sbjct 42139 GGCGAACAAATCTCTCACACGCGAAGGTCCGACACCGACAAACATTTCAACGAACTCAGA 42198 Query 11792 -CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | || | ||||||| ||| || || |||||| || || |||| || || | Sbjct 42199 ACCGCTCA-CACTGAA-GAATGGTACTCCAGACTCGCCGGCTGTGGCCTTGGCAAGCAAT 42256 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||||||| |||||||| | ||||| | || || || || |||||||||||||| Sbjct 42257 GTCTTACCAGTACCAGGAGGGCCAGCTAAAATAGCACCTCGAGGGATCTTGGCACC 42312 >seq214 Length=102255 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539 |||| || | || ||||| || ||| ||||| ||||| | || || || || | Sbjct 71403 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCTAAGCATTTCATTGACACAGGCGCTG 71344 Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599 | ||||||||| | ||||| ||| ||||||| ||| | |||||||| ||| || Sbjct 71343 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 71284 Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651 ||||||||||| ||| | || || ||||| || || ||||||||||| || Sbjct 71283 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCG 71232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962438827600