Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq701 111 2e-19 seq413 93.3 5e-14 >seq701 Length=4748 Score = 111 bits (122), Expect = 2e-19 Identities = 420/652 (64%), Gaps = 8/652 (1%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| || || || || ||||||| || ||| || | | |||| || | |||| Sbjct 1985 CCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGTTTCATG 1926 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || |||||||| || | || | ||| | | | | || || || || Sbjct 1925 AAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCG 1866 Query 48276 CTATTCCTTTTAAGTTC-AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 ||| | || || |||||| || | | ||||| ||||| || || | || || Sbjct 1865 TGGTTCTTACGGAGATCCAAGAAA-TCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGAT 1807 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | |||| ||||| || || || || || || | ||| | ||||| ||||| | Sbjct 1806 GGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAA 1747 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 || | | ||| || ||||||||||| ||| |||| ||||| || | || || || Sbjct 1746 GACACGAAGCATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCC 1687 Query 48455 ACTAGCTCTTATA--TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGA 48512 | |||| | ||| | | ||| | ||| |||||||| ||||| || || || | Sbjct 1686 AGTAGCACGAATACGGTGCACATT--TAGACCAATACCACCAGCCATCTTGGAGATCATG 1629 Query 48513 GCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGA 48572 ||||| || || ||||| || ||||| || ||||| || || |||||| | | Sbjct 1628 GCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAG 1569 Query 48573 AAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 || ||| || | ||| || ||| ||| || | ||| || | || || || ||||| Sbjct 1568 AAGCAAGATGATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGC 1509 Query 48633 ATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTG 48691 | || | || || | || || ||||| || | || || ||||| || Sbjct 1508 GTGAAGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCC 1449 Query 48692 ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATT 48751 | ||||| | ||| |||||||| | ||| | ||||| | || ||||| || | Sbjct 1448 CAG-ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTC 1390 Query 48752 TATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 ||||| | || |||||| ||||| || || || ||||| || | |||| Sbjct 1389 AATTTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTAT 1338 >seq413 Length=40179 Score = 93.3 bits (102), Expect = 5e-14 Identities = 361/562 (64%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||| || || |||||||| | | || | || || || || || | | Sbjct 35451 CAGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 35510 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| || || | || || | |||||| ||||| || || | ||| ||||| Sbjct 35511 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAG 35570 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA-TCATTATTATG 19139 ||||| || || || ||||| ||||| || | | || || || | || |||| || Sbjct 35571 ATACCCTCAACAGCAGCAAAGGCAACGAGACGCTGGGCA-AAGGAGGAGTCCTTATCCTG 35629 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | ||||| |||||||||||| | || || || ||||| || | || Sbjct 35630 GATCCATCGGATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTT 35689 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || ||||| | |||| | | || || | || | || || | | ||| | Sbjct 35690 GAAGAGATATGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGT 35749 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || || ||||| || || || ||||| || ||||| || || | || || | || Sbjct 35750 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGAT 35809 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| || || | || |||| ||||| | || || || || || |||||| || || Sbjct 35810 CTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGC 35869 Query 19380 AAAAAATGCTAATACATGTTTAATA-----AAATGTTTTTCATC--TGAGGTTAATGTAT 19432 || || || | |||| | | || || | ||| | | ||| || | Sbjct 35870 GAAGAAAGC--AAGGATGTGAGAGACGAAGAACTGCTCATCAGCAGTCAGGCGGTTG--T 35925 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 |||| || | || ||| || || | ||| | || ||| | ||||| || |||||||| | Sbjct 35926 TCCAGTCGTGAAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 35985 Query 19493 CTTTTTTATACATGTTCCATAT 19514 | || || ||||| | ||| || Sbjct 35986 CCTTCTTGTACATTTGCCAAAT 36007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095857444880