Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq423 116 2e-20
seq285 98.7 6e-15
>seq423
Length=39909
Score = 116 bits (128), Expect = 2e-20
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| || |||||||| ||| ||| || || || || || || || ||
Sbjct 21248 ACGGAGGCGGAGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGT 21189
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||||||||||||||||||||||| || || || || || |||||||| || ||
Sbjct 21188 TCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCC 21129
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| |||||||| || ||| || || ||||| | | | || ||||
Sbjct 21128 CTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAA-CCTCAA 21070
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
|||| || || || || ||||| ||||| ||||
Sbjct 21069 GGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 21037
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || || ||| ||| || | || || || | |||||
Sbjct 21476 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 21417
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||| ||||||||||| ||||| || || || || |||||||| || ||||| ||
Sbjct 21416 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGGGGAATACC 21357
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||||| ||||| || ||| ||||| ||||| | || | | ||| |
Sbjct 21356 CTCCTTGTCTTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 21298
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || || || || ||||| ||||| |||||
Sbjct 21297 GAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTG 21258
>seq285
Length=40966
Score = 98.7 bits (108), Expect = 6e-15
Identities = 442/688 (64%), Gaps = 27/688 (4%)
Strand=Plus/Minus
Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544
||||||| ||||||||||||||||||| |||||| | ||||| ||| || |||| ||
Sbjct 20216 GACGTCTCCGAACTGCTTGTGAACGTGCCAAGCGAACACTTTCCTCTTCTGCTCAGACCT 20157
Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCT 475603
|| | || | || ||||| || || || ||||| || || ||| ||| || | |||
Sbjct 20156 CTATCGAGATCGACTCTCTCTTCGAGGGTATTGACTTCTACACCTC-TATCACCCGTGCT 20098
Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663
|| || || | || |||||||| || || || | ||||| || | ||
Sbjct 20097 CGTTTCGAGGAGCTCTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGACCGTGTC 20038
Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723
|||| || | || | ||||| || | ||||| || ||||| || || || || ||
Sbjct 20037 CTCACCGACGCCAAGATCGACAAGTCTCTTGTCCACGAGATTGTCCTCGTCGGTGGCTCT 19978
Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGT 475778
|| | ||||| | |||| || |||| | || || || || || ||
Sbjct 19977 ACCCGTATTCCCCGTGT-CCAGAA--GC--TCATTACCGACTACTTCAACGGAAAGGAGC 19923
Query 475779 TAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGC 475836
|| |||| | || |||||||| |||||||| || || || || ||||| || ||
Sbjct 19922 CCAA--CAAGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGC 19865
Query 475837 TATTTTATCAGGTCAATCAGACGAGAAA--CTA--AATAATATTGTACTTGTTGACGTAA 475892
||| | || ||| || | || || | | || | || | ||| |||| ||
Sbjct 19864 GATTCTCTCCGGT-GATACCTCCAGCAAGGCCACCAACGAGATCCTGCTTCTTGATGTCG 19806
Query 475893 CTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAA 475952
| || || || | ||| | || || | ||| || || ||||| || ||||| | | |
Sbjct 19805 CCCCCCTCTCTCTCGGTATCGAGACCGCTGGTGGTATGATGACCAAGCTTATCCCCCGCA 19746
Query 475953 ATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAA 476012
| || | ||||| || || || | || || ||||| | || || || || |
Sbjct 19745 ACACCACCATCCCCACAAAGAAGTCTGAGGTCTTCTCCACCTTCTCCGACAACCAGCCTG 19686
Query 476013 CTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT- 476071
||| ||||| ||| || ||||| | || |||||| | | ||||| |||
Sbjct 19685 GTGTTCTTATCCAGGTCTACGAGGGTGAGCGTCAACGCACTAAGG---ACAACAATCTTA 19629
Query 476072 --GGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129
|| | || | || ||||| || |||||||| | || ||||| || ||||| |
Sbjct 19628 TGGGCAAGTTCGAGCTCACTGGTATCCCCCCTGCTCCTCGTGGTGTTCCCCAGATTGAGG 19569
Query 476130 TTACTTTTGATATTGATGCAAATGGTAT 476157
| || || ||| ||||||| || |||||
Sbjct 19568 TCACCTTCGATCTTGATGCCAACGGTAT 19541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268100187682616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |