Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq423 116 2e-20 seq285 98.7 6e-15 >seq423 Length=39909 Score = 116 bits (128), Expect = 2e-20 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || || || || || || || || Sbjct 21248 ACGGAGGCGGAGGACGAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCGGCAAGGGT 21189 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||||||||||||||||||||| || || || || || |||||||| || || Sbjct 21188 TCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCC 21129 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| || ||| || || ||||| | | | || |||| Sbjct 21128 CTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGACGACTCAA-CCTCAA 21070 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 |||| || || || || ||||| ||||| |||| Sbjct 21069 GGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 21037 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || | || || || | ||||| Sbjct 21476 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 21417 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||||||||| ||||| || || || || |||||||| || ||||| || Sbjct 21416 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCCGGGGGAATACC 21357 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| || ||| ||||| ||||| | || | | ||| | Sbjct 21356 CTCCTTGTCTTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 21298 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || ||||| ||||| ||||| Sbjct 21297 GAGTAATGGTCTTTCCAGTAAGGGTCTTGACGAAGATTTG 21258 >seq285 Length=40966 Score = 98.7 bits (108), Expect = 6e-15 Identities = 442/688 (64%), Gaps = 27/688 (4%) Strand=Plus/Minus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 ||||||| ||||||||||||||||||| |||||| | ||||| ||| || |||| || Sbjct 20216 GACGTCTCCGAACTGCTTGTGAACGTGCCAAGCGAACACTTTCCTCTTCTGCTCAGACCT 20157 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCT 475603 || | || | || ||||| || || || ||||| || || ||| ||| || | ||| Sbjct 20156 CTATCGAGATCGACTCTCTCTTCGAGGGTATTGACTTCTACACCTC-TATCACCCGTGCT 20098 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 || || || | || |||||||| || || || | ||||| || | || Sbjct 20097 CGTTTCGAGGAGCTCTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGACCGTGTC 20038 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 |||| || | || | ||||| || | ||||| || ||||| || || || || || Sbjct 20037 CTCACCGACGCCAAGATCGACAAGTCTCTTGTCCACGAGATTGTCCTCGTCGGTGGCTCT 19978 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGT 475778 || | ||||| | |||| || |||| | || || || || || || Sbjct 19977 ACCCGTATTCCCCGTGT-CCAGAA--GC--TCATTACCGACTACTTCAACGGAAAGGAGC 19923 Query 475779 TAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGC 475836 || |||| | || |||||||| |||||||| || || || || ||||| || || Sbjct 19922 CCAA--CAAGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCCGC 19865 Query 475837 TATTTTATCAGGTCAATCAGACGAGAAA--CTA--AATAATATTGTACTTGTTGACGTAA 475892 ||| | || ||| || | || || | | || | || | ||| |||| || Sbjct 19864 GATTCTCTCCGGT-GATACCTCCAGCAAGGCCACCAACGAGATCCTGCTTCTTGATGTCG 19806 Query 475893 CTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAA 475952 | || || || | ||| | || || | ||| || || ||||| || ||||| | | | Sbjct 19805 CCCCCCTCTCTCTCGGTATCGAGACCGCTGGTGGTATGATGACCAAGCTTATCCCCCGCA 19746 Query 475953 ATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAA 476012 | || | ||||| || || || | || || ||||| | || || || || | Sbjct 19745 ACACCACCATCCCCACAAAGAAGTCTGAGGTCTTCTCCACCTTCTCCGACAACCAGCCTG 19686 Query 476013 CTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT- 476071 ||| ||||| ||| || ||||| | || |||||| | | ||||| ||| Sbjct 19685 GTGTTCTTATCCAGGTCTACGAGGGTGAGCGTCAACGCACTAAGG---ACAACAATCTTA 19629 Query 476072 --GGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129 || | || | || ||||| || |||||||| | || ||||| || ||||| | Sbjct 19628 TGGGCAAGTTCGAGCTCACTGGTATCCCCCCTGCTCCTCGTGGTGTTCCCCAGATTGAGG 19569 Query 476130 TTACTTTTGATATTGATGCAAATGGTAT 476157 | || || ||| ||||||| || ||||| Sbjct 19568 TCACCTTCGATCTTGATGCCAACGGTAT 19541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268100187682616