Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq701 217 4e-51
seq413 158 4e-33
seq1078 98.7 3e-15
seq291 98.7 3e-15
>seq701
Length=4748
Score = 217 bits (240), Expect = 4e-51
Identities = 584/881 (66%), Gaps = 19/881 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || | ||| ||| ||| ||||| || || |||||| || | ||||| |||||
Sbjct 2217 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 2158
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| ||
Sbjct 2157 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 2098
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | | || || || |||| |||| |||
Sbjct 2097 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCCTT 2038
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
||| || |||| || | ||| | | | ||||| ||||| || || || ||||||
Sbjct 2037 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 1980
Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924
|||| | |||||| | ||| | ||| | || || | | |||| | ||| ||
Sbjct 1979 CACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAA---CACGTTTCATGAAA 1923
Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984
| |||| ||||| ||| |||||| || | || |||||| | |||||
Sbjct 1922 AGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGG 1863
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || ||||| || | ||||| || ||||| || || || |||
Sbjct 1862 TTCTTACGGAGATCCAAGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 1803
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
||| ||| | |||| |||||||| || |||||||||||||| || |||||||||
Sbjct 1802 AAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACA 1743
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161
| |||||||||| ||||||||| || || || ||||| ||| || | || ||||
Sbjct 1742 CGAAGCATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTA 1683
Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220
| |||| | || | || ||| ||||||||||| | |||| || || || || ||
Sbjct 1682 GCACGAATACGGTGCACATTTAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACA 1624
Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGC 156279
||| | ||||| | | || || |||||| || || | ||| | | ||| |||
Sbjct 1623 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGC 1565
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || |||||| || | || || || || ||||| || || || | ||||| | |
Sbjct 1564 AAGATGATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGA 1505
Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGA 156398
| |||| ||||||| || |||||||||| | ||| | || | |||| |
Sbjct 1504 AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAG- 1446
Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458
|||| | ||| || | ||| ||| |||||||| ||||| |||||| || ||||||
Sbjct 1445 ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATT 1386
Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| ||||||| || |||| ||| || || || || ||
Sbjct 1385 TTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1345
>seq413
Length=40179
Score = 158 bits (174), Expect = 4e-33
Identities = 251/355 (71%), Gaps = 4/355 (1%)
Strand=Plus/Minus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| || ||| ||| || || | ||||| |||||| || || || || || |
Sbjct 35805 CCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCT 35746
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAA-CTATTCAAC 133423
| || || || || || |||||||| || ||| |||| | ||| | || ||||||
Sbjct 35745 ACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGCCCAGC-GAACATATCTCTTCAAC 35687
Query 133424 GCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482
|||||| | || |||| || || |||||| |||||||||| || |||||||||
Sbjct 35686 GCCATT-GAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCA 35628
Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||| ||| | ||||| ||||||||||| ||||||| || ||||| || ||
Sbjct 35627 GGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTT 35568
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
|||||||| || ||| |||||| || ||||| || ||||||||| | | ||||| ||
Sbjct 35567 CTTCAGTGGCGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCT 35508
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || || ||||| || || || | ||||||| |||||||| || ||||||
Sbjct 35507 GACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCC 35453
>seq1078
Length=45405
Score = 98.7 bits (108), Expect = 3e-15
Identities = 106/140 (76%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || ||||| |||| ||||| |||||||| ||||||||
Sbjct 12122 AGAATTTCCTTGAGACGTGGCACACCGAGGGTAACGTT---CTTGGACGACACACCAGCG 12178
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||| ||||| || | ||||||| |||||||||||| || || || |
Sbjct 12179 AAATGGAAAGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 12238
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 12239 ACACCAACCATTTCACCAGG 12258
Score = 98.7 bits (108), Expect = 3e-15
Identities = 202/296 (68%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||||| | ||||| || || |||||||||||||| ||| | || || || ||
Sbjct 12899 TCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGCA 12958
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690
|||||||| ||||| | |||||| |||| || |||||||| | || | || || ||
Sbjct 12959 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTC-GCTGGGAGTGAG 13017
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | | | ||| |||| ||||| ||||| ||||| || || | ||| ||||||
Sbjct 13018 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 13077
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
||||| || | || | | || | || | || |||||||| || || || | ||
Sbjct 13078 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 13137
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864
||| || | || |||| || ||||| || || || | ||||||||| ||
Sbjct 13138 CTGACCGACAAGCGCTGTCATTTGAGAAATGTTGATAGATGA--GCCCTTGGAACC 13191
>seq291
Length=61104
Score = 98.7 bits (108), Expect = 3e-15
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | || || ||||| | | ||||||| || | ||| | || ||
Sbjct 35039 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 34980
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || |||||||| | ||||||||||||||| ||||| || |||||
Sbjct 34979 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAT 34920
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| ||||| ||||| ||||| | ||||||| |||| || || ||
Sbjct 34919 CGGAGACCGCCATCACGAGCACGACCCTCGACAGGTTGTCGGGT 34876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471782864184754
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |