Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq701 217 4e-51 seq413 158 4e-33 seq1078 98.7 3e-15 seq291 98.7 3e-15 >seq701 Length=4748 Score = 217 bits (240), Expect = 4e-51 Identities = 584/881 (66%), Gaps = 19/881 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||| ||||| || || |||||| || | ||||| ||||| Sbjct 2217 GTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 2158 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 2157 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 2098 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| ||| Sbjct 2097 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCCTT 2038 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | | ||||| ||||| || || || |||||| Sbjct 2037 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 1980 Query 155868 CACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAAT 155924 |||| | |||||| | ||| | ||| | || || | | |||| | ||| || Sbjct 1979 CACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAA---CACGTTTCATGAAA 1923 Query 155925 ACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGA 155984 | |||| ||||| ||| |||||| || | || |||||| | ||||| Sbjct 1922 AGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCGTGG 1863 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || ||||| || | ||||| || ||||| || || || ||| Sbjct 1862 TTCTTACGGAGATCCAAGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 1803 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| ||| | |||| |||||||| || |||||||||||||| || ||||||||| Sbjct 1802 AAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACA 1743 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||||||| ||||||||| || || || ||||| ||| || | || |||| Sbjct 1742 CGAAGCATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTA 1683 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCA 156220 | |||| | || | || ||| ||||||||||| | |||| || || || || || Sbjct 1682 GCACGAATACGGTGCACATTTAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACA 1624 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGC 156279 ||| | ||||| | | || || |||||| || || | ||| | | ||| ||| Sbjct 1623 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGC 1565 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || |||||| || | || || || || ||||| || || || | ||||| | | Sbjct 1564 AAGATGATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGA 1505 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGA 156398 | |||| ||||||| || |||||||||| | ||| | || | |||| | Sbjct 1504 AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAG- 1446 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 |||| | ||| || | ||| ||| |||||||| ||||| |||||| || |||||| Sbjct 1445 ATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATT 1386 Query 156459 CGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 1385 TTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1345 >seq413 Length=40179 Score = 158 bits (174), Expect = 4e-33 Identities = 251/355 (71%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || ||| ||| || || | ||||| |||||| || || || || || | Sbjct 35805 CCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCT 35746 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAA-CTATTCAAC 133423 | || || || || || |||||||| || ||| |||| | ||| | || |||||| Sbjct 35745 ACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGCCCAGC-GAACATATCTCTTCAAC 35687 Query 133424 GCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 |||||| | || |||| || || |||||| |||||||||| || ||||||||| Sbjct 35686 GCCATT-GAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATCCGATGGATCCA 35628 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||| ||| | ||||| ||||||||||| ||||||| || ||||| || || Sbjct 35627 GGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTGTTGAGGGTATCTT 35568 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 |||||||| || ||| |||||| || ||||| || ||||||||| | | ||||| || Sbjct 35567 CTTCAGTGGCGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCT 35508 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || ||||| || || || | ||||||| |||||||| || |||||| Sbjct 35507 GACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCC 35453 >seq1078 Length=45405 Score = 98.7 bits (108), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| |||| ||||| |||||||| |||||||| Sbjct 12122 AGAATTTCCTTGAGACGTGGCACACCGAGGGTAACGTT---CTTGGACGACACACCAGCG 12178 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| ||||| || | ||||||| |||||||||||| || || || | Sbjct 12179 AAATGGAAAGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 12238 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 12239 ACACCAACCATTTCACCAGG 12258 Score = 98.7 bits (108), Expect = 3e-15 Identities = 202/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| || || |||||||||||||| ||| | || || || || Sbjct 12899 TCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACTGCA 12958 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 |||||||| ||||| | |||||| |||| || |||||||| | || | || || || Sbjct 12959 GTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTC-GCTGGGAGTGAG 13017 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| |||| ||||| ||||| ||||| || || | ||| |||||| Sbjct 13018 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 13077 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| || | || | | || | || | || |||||||| || || || | || Sbjct 13078 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 13137 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCC 302864 ||| || | || |||| || ||||| || || || | ||||||||| || Sbjct 13138 CTGACCGACAAGCGCTGTCATTTGAGAAATGTTGATAGATGA--GCCCTTGGAACC 13191 >seq291 Length=61104 Score = 98.7 bits (108), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 35039 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 34980 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| ||||| || ||||| Sbjct 34979 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAT 34920 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||| ||||| ||||| | ||||||| |||| || || || Sbjct 34919 CGGAGACCGCCATCACGAGCACGACCCTCGACAGGTTGTCGGGT 34876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471782864184754