Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq413 159 5e-33 seq701 118 2e-20 seq871 114 2e-19 seq344 104 4e-16 >seq413 Length=40179 Score = 159 bits (176), Expect = 5e-33 Identities = 234/328 (71%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| ||| || || |||||||| || ||||| Sbjct 35471 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTT 35530 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| ||| ||| ||||| ||||| || || ||||| Sbjct 35531 CTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCTCAACAGCAGCAAA 35590 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | ||||| |||| |||||| | | | ||| | | |||||| || ||||| Sbjct 35591 GGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCCCA 35647 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCT 794578 || ||||| || | | |||| | || || |||||| ||||| | || | || Sbjct 35648 GTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATATGTTCG-CT 35706 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | || ||||||| |||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct 35707 GGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCT 35766 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||||||| || ||||| Sbjct 35767 CCATCATGATCTGGAAGCCGTAGAAGCA 35794 Score = 120 bits (132), Expect = 5e-21 Identities = 169/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| |||||| |||||||||||||| | || ||||| |||||| | ||| Sbjct 35175 ACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAG 35234 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGA 794034 ||||||| | | |||| ||||||| || |||||| |||| || || || |||| Sbjct 35235 GGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGA--CAAGGAGACGATCAGCGA 35292 Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094 |||| ||||||||||| ||||||| | | ||||||||||| ||| || ||| || | Sbjct 35293 CGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGAG 35352 Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148 ||| ||| ||||| | ||| || |||||| || ||||||| | ||||| Sbjct 35353 CTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT-CCTGG 35405 >seq701 Length=4748 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| ||| ||||| || ||||| || |||| || || || Sbjct 1776 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAATACCATTCGA 1717 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | || || | |||| | | || Sbjct 1716 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 1657 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 1656 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1597 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | ||||| Sbjct 1596 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGATAATTGGGGCTGAGGAGTGCC 1537 Query 2073780 GGCATTGAAGAGCGTggg 2073797 |||||||||||||||||| Sbjct 1536 GGCATTGAAGAGCGTGGG 1519 >seq871 Length=10159 Score = 114 bits (126), Expect = 2e-19 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || || | || ||||| ||||| |||||| | | Sbjct 4025 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTTGGCTGCAAAACCGTCGCCAACATGA 4084 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| |||||||| |||||||| || || ||||| Sbjct 4085 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAAACTTTCAACAT 4127 >seq344 Length=58925 Score = 104 bits (114), Expect = 4e-16 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| |||| || || ||| ||| Sbjct 51093 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGCAG 51152 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | ||||||||||| |||| Sbjct 51153 GATGAGACGGACAGAAGTCTGGATCTCTCGGG 51184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916050458058638