Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016- 06-02] 1,842 sequences; 41,955,053 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq285 161 7e-34 seq1078 105 5e-17 >seq285 Length=40966 Score = 161 bits (178), Expect = 7e-34 Identities = 700/1100 (64%), Gaps = 13/1100 (1%) Strand=Plus/Plus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| ||| || ||||| ||| || || || |||| | || || | Sbjct 19480 ATTGGTAATGACAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACGGCGGAGACGTTCAT 19539 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||||| |||||||| | ||| || ||||| ||||| || || || || | ||||||| Sbjct 19540 GATACCGTTGGCATCAAGATCGAAGGTGACCTCAATCTGGGGAACACCACGAGGAGCAGG 19599 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||||| || | | || | |||| | ||| || || |||||| || || || Sbjct 19600 GGGGATACCAGTGAGCTCGAACTTGCCCATAAGATTGTTGTCCTTAGTGCGTTGACGCTC 19659 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||||| | | |||||| ||| ||| || || || || | || | || || Sbjct 19660 ACCCTCGTAGACCTGGATAAGAACACCAGGCTGGTTGTCGGAGAAGGTGGAGAAGACCTC 19719 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || || || || || || ||||| | |||| |||||||| ||||||||||| Sbjct 19720 AGACTTCTTTGTGGGGATGGTGGTGTTGCGGGGGATAAGCTTGGTCATCATACCACCAGC 19779 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 281737 || || | ||| ||||| || || | |||||||| || | || | || | | || Sbjct 19780 GGTCTCGATACCGAGAGAGAGGGGGGCGACATCAAGAAGCAGGATCTCGTTGGTGGCCTT 19839 Query 281738 TCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | | || | ||| ||||| || || || | || ||||| || |||||||| || Sbjct 19840 GCTGGAGGTATCACCGGAGAGAATCGCGGCCTGGACGGCGGCACCGTAGGCAACAGCCTC 19899 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 281856 |||||| || | | | || | | || || ||||| | | | || || | ||| Sbjct 19900 ATCAGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAGTCGGTAATGAGCT-TCT 19958 Query 281857 -TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 || |||||||| | || || || || | ||||| || || || | || || | Sbjct 19959 GGACACGGGGAATACGGGTAGAGCCACCGACGAGGACAATCTCGTGGACAAGAGACTTGT 20018 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTG 281975 | | || | || | || || ||||| | | | || || | || Sbjct 20019 CGATCTTGGCGTCGGTGAGGACACGGTCGACGGGCTGGATGGTGGATCGGAAGAGATCCT 20078 Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACA 282035 || || || ||||| ||| | || | || | | | ||||| || ||||| | Sbjct 20079 GGCAGAGCTCCTCGAAACGAGCACGGGTGATAGAGGTGTAGAAGTCAATACCCTCGAAGA 20138 Query 282036 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095 ||| || | || || | || |||| ||||| || |||| || || |||||||||| Sbjct 20139 GAGAGTCGATCTCGATAGAGGTCTGAGCAGAAGAGGAAAGTGTTCGCTTGGCACGTTCAC 20198 Query 282096 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGATTCAAA--TCTGTTTTATAT 282151 | || || | || | ||| | || || || ||| | | || || | || || Sbjct 20199 AAGCAGTTCGGAGACGTCGCAGAGC----GCGGACGTTGGTGCTAAGGTCCTTCTTGAAT 20254 Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || || ||||| || | || | | || ||||| || ||||| |||||||| ||| Sbjct 20255 TTCCTTTTGAATTCGTTTACGAAGTGGTTGACCAGACGGTTGTCAAAGTCTTCACCACCC 20314 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 || | ||| | || | |||| | || | ||| | || || |||| | | ||| Sbjct 20315 AAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGTAAGGAGA 20374 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331 | ||||| || |||||||| | ||| || || || || || || || Sbjct 20375 GACACATCGAAAGTGCCACCACCAAGATCGAAGATCAGGACGTTGCGCTCGCCCTCAACC 20434 Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || |||||||| || |||| || |||||||| ||||| || || |||| | ||| Sbjct 20435 TTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGTTCGTTGATGATTCGGAGAACG 20494 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||||||| || || || ||||| || |||||||| | || |||||||| || || Sbjct 20495 TTAAGACCGGCGATGAGACCAGCATCCTTGGTGGCTTGACGCTGAGAATCGTTGAAGTAG 20554 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| ||||||| |||||| Sbjct 20555 GCAGGGACAGTAACAACGGC 20574 >seq1078 Length=45405 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| || || ||| || |||| || |||||||| ||||||||||| | || |||||| Sbjct 14448 GGTAAGGAGGGCCGTCTTCGAGGTAACTTGATGGGTAAGCGTGTCGACTTTTCGGCACGT 14389 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| |||| | || || |||| |||| ||||||||||||| || |||| Sbjct 14388 ACTGTCATTACTGGTGATGCCAACCTTTCTCTACATGAGGTTGGTGTTCCTCGCAGTATT 14329 Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACA 432440 || | | || || | ||||| ||||||| Sbjct 14328 GCCAGGACCCTCACCTACCCCGAAACTGTAACA 14296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740539965584292