Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20sp._20NRRL_2054464_20[genbank_20GCA_5F001654545.1_202016-
06-02] 1,842 sequences; 41,955,053 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq701 224 1e-53
seq413 131 2e-25
seq214 91.5 2e-13
>seq701
Length=4748
Score = 224 bits (248), Expect = 1e-53
Identities = 1146/1791 (64%), Gaps = 57/1791 (3%)
Strand=Plus/Minus
Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383
|||| | |||||||||| || || |||| || || || |||||||| ||||||
Sbjct 3173 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCGGTC 3114
Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442
||||| || | ||||| || | || | |||||| | || |||| |||||| ||
Sbjct 3113 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 3055
Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500
| |||| | ||||| ||| |||| | ||||||||| || || | || |||
Sbjct 3054 CTTCATGTGAATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 2997
Query 110501 ATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATA 110557
|| | || ||| || || | || ||||| || || || ||| ||||| |
Sbjct 2996 ATCTGAACGAC---CTGGCGCTGAGAGATCTCCCAGACAGTCTTGTACAGAGCCTTGACA 2940
Query 110558 TCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTC 110617
|| | ||||| | | || ||||| |||||||| | | | ||| | | ||||
Sbjct 2939 TCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTC 2880
Query 110618 ATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATG 110677
||| | | |||||| ||||| || | ||||| |||| || ||||||||
Sbjct 2879 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 2820
Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737
|||||||| ||||| | | ||||||| || | ||||| || || |||||
Sbjct 2819 TGGAACTCACCAGCGAGAACACGGCGTTGGTAGATATTGGAGGTGTAGGGCTCGAAGCAC 2760
Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797
|| || || ||||| || || | ||| ||| || ||||| || || | | ||||||
Sbjct 2759 TCGTTGTTGCCCAAAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCGAGGAGCAGACTG 2700
Query 110798 TTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 110852
||||| | || | ||||| ||||| ||| | |||||||| || | |
Sbjct 2699 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 2643
Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912
| || || || |||| ||||||||||||| || | || | || ||||| |||||||
Sbjct 2642 GAG-GGCTTGACGTTCC-ACATGTCAAACTGGAGGATACCCTCAGAGGCGGGGGAACCCT 2585
Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 110971
||||| |||| ||| | | | ||||| | ||| | || |||| |||
Sbjct 2584 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 2526
Query 110972 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 111031
||||| ||||| |||||||| | || | ||| || || ||| || || | |
Sbjct 2525 TGATAGATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGG-G 2467
Query 111032 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090
| ||| | || || |||| || || || |||||||| | |||||| |||| |||
Sbjct 2466 CATACGCAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTG 2407
Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 111150
||||| ||| || || || || || || || || || |||| |||
Sbjct 2406 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 2347
Query 111151 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 111209
|| || |||||| || ||| | ||| || || || | | || | || ||
Sbjct 2346 CAGGTTGCGAATAACAACCTGACTGACCTTATGCAACTTCTTGA-AGTCGTA---GCAAG 2291
Query 111210 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266
|| || | ||| | || || | | || || | ||||| ||||| ||
Sbjct 2290 CTTCATCGTAGTTGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCT 2231
Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326
| || | |||||| | |||||| || || | |||||| || || || || |
Sbjct 2230 CGTCAGGGGCACAGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGA 2171
Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386
||||||||||| ||||| |||||| |||||||||||||||||| | || | || |
Sbjct 2170 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 2111
Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG 111445
|||| ||||| | | ||||| || | ||||| | || | | || | |||| |||
Sbjct 2110 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG----ATGGTCTTG 2055
Query 111446 -GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG 111502
| || | |||||| |||||||||| ||| || || || |||||||| || |
Sbjct 2054 CGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAG 1995
Query 111503 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACC 111562
|||| ||| || || || || || || | || | ||| | ||| | |||||
Sbjct 1994 TCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACA 1935
Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTC-TACACCGAGCCT 111620
|| ||||||||||| || || ||||| |||| | | ||| ||||| | ||| || |||
Sbjct 1934 CGTTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAA-AGATCACGGGCACGGA-CCT 1877
Query 111621 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 111680
| || | ||| ||||| || | || | ||| || | || ||| | |||||| ||||
Sbjct 1876 CCTCCTTACCGTGGTTCTTACGGAGATCCAAGAAATCGAAGACATCAGAGTGCCAAGGCT 1817
Query 111681 CAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTG 111737
| || |||| || | || || ||| ||| | || | ||||| || || |
Sbjct 1816 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAG 1757
Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA 111796
|| ||| || || |||||||| |||| |||||||| ||| ||| || || || |||
Sbjct 1756 TGTTGTTGAAGACACGAAGCATAGGAACAATACCATTCGATGTACCGTTGGTACCGGCGA 1697
Query 111797 -ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT 111855
|| ||| | | || | | | || | | | |||||||| |||||| |||
Sbjct 1696 TGTATGAG--CCAGTAGCACGAATACGGTGCACATTTAGACCAATACCACCAGCCATCTT 1639
Query 111856 TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTT 111915
||||| ||||| | | ||||| | ||||| || | || ||| ||||| |
Sbjct 1638 GGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCAT 1579
Query 111916 GGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGG 111975
| | | ||||||| || | || || || || || ||||||||||| || ||
Sbjct 1578 ATCAACCAAGAAGCAAGATGATAATTGGGGCTGAGGAGTGCCGGCATTGAAGAGCGTGGG 1519
Query 111976 TGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCA 112033
| || || ||| | | |||| |||||| | ||||||||||||||| ||
Sbjct 1518 GGAAGCATGCGTGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCG 1461
Query 112034 ATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084
|| || || || ||| || | | || ||||||| ||||| ||| |||
Sbjct 1460 ATATCATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 1410
>seq413
Length=40179
Score = 131 bits (144), Expect = 2e-25
Identities = 334/503 (66%), Gaps = 18/503 (4%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| | || |||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 35166 TAGTCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 35225
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCCCAACTTGTTTGAGGA 122485
||||| || || || | || || | | | | || |||| ||||
Sbjct 35226 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGGA 35280
Query 122486 GACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT 122545
||||||| | || |||||||||||| ||| ||||||||||| |||| ||||
Sbjct 35281 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGG 35340
Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605
||| || || || || || |||| | | |||||| || || || | | |||
Sbjct 35341 CACAGGGAAGAGCTTCGGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATAT 35400
Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCAA 122662
| ||||| | | || ||| | | || | || | || ||| || |||||
Sbjct 35401 CCTGGATCATCTGCTTACTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAA 35457
Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722
| || ||| |||||||| || || || || || || || |||||| ||||| ||||
Sbjct 35458 AGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCA 35517
Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782
||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||||
Sbjct 35518 TGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCGCCACTGAAGAAGATACCCT 35577
Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCAT 122841
| ||| ||||| |||| || || | ||| |||||| ||| ||| | | | ||||
Sbjct 35578 CAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCAT 35636
Query 122842 TTCATTGCCCATTTCGCCTTCTT 122864
|| ||||| | ||||||||
Sbjct 35637 CGGATGGCCCAGTCAGCCTTCTT 35659
>seq214
Length=102255
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664
|||| || |||| || ||||| ||||| ||| |||||| ||| | || || |
Sbjct 71403 ATGGACGCATTGCCCCTCGATCAGGTCTGGCTTCTAAGCATTTCATTGACACAGGCGCTG 71344
Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724
|||| || ||| |||| || ||| ||||||| ||| | |||||||| || ||
Sbjct 71343 GTGTCATCGATGCCGATTACCGTGGTCAAGTCAAGGTCCTGCTCTTCAACCATAACGAAT 71284
Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777
||||||||||| ||| |||| || ||||| || |||||||| || ||||||
Sbjct 71283 CCGACTTTGAGGTGAAGGAAGGCGACCGCATTGCTCAACTTGTTCTAGAGCGC 71231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628017539563200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |